More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3477 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  100 
 
 
622 aa  1261    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_009052  Sbal_2364  methyl-accepting chemotaxis sensory transducer  49.92 
 
 
622 aa  603  1.0000000000000001e-171  Shewanella baltica OS155  Bacteria  normal  0.493821  n/a   
 
 
-
 
NC_009438  Sputcn32_2121  methyl-accepting chemotaxis sensory transducer  50.24 
 
 
622 aa  588  1e-166  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0316  methyl-accepting chemotaxis protein  50.32 
 
 
652 aa  586  1e-166  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  48.56 
 
 
623 aa  578  1e-164  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  48.24 
 
 
623 aa  564  1.0000000000000001e-159  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1741  methyl-accepting chemotaxis protein  49.2 
 
 
623 aa  534  1e-150  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  40.19 
 
 
627 aa  425  1e-117  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  38.69 
 
 
626 aa  414  1e-114  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  34.98 
 
 
625 aa  341  2e-92  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  33.28 
 
 
629 aa  341  2e-92  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  33.28 
 
 
629 aa  340  5.9999999999999996e-92  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  34.41 
 
 
629 aa  338  9.999999999999999e-92  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  33.39 
 
 
629 aa  333  4e-90  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  36.78 
 
 
627 aa  329  1.0000000000000001e-88  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  33.33 
 
 
632 aa  325  1e-87  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  33.39 
 
 
632 aa  325  2e-87  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_007005  Psyr_3534  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.55 
 
 
629 aa  323  7e-87  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.667463  normal  0.0882884 
 
 
-
 
NC_007005  Psyr_0906  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.72 
 
 
626 aa  323  8e-87  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  36.2 
 
 
627 aa  322  9.999999999999999e-87  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  34.39 
 
 
626 aa  319  9e-86  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.12 
 
 
630 aa  317  4e-85  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  33.7 
 
 
626 aa  314  3.9999999999999997e-84  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  32.91 
 
 
630 aa  311  2.9999999999999997e-83  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0799  methyl-accepting chemotaxis protein  35.02 
 
 
624 aa  310  5.9999999999999995e-83  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1383  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
636 aa  308  1.0000000000000001e-82  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00353653  normal  0.775857 
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  33.07 
 
 
643 aa  307  4.0000000000000004e-82  Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  32.91 
 
 
628 aa  306  5.0000000000000004e-82  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  33.75 
 
 
629 aa  306  6e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.07 
 
 
628 aa  306  9.000000000000001e-82  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.65 
 
 
626 aa  306  1.0000000000000001e-81  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  34.5 
 
 
633 aa  304  3.0000000000000004e-81  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  32.38 
 
 
629 aa  304  4.0000000000000003e-81  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0365  accessory colonization factor AcfB  31.96 
 
 
626 aa  302  1e-80  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.55 
 
 
626 aa  297  3e-79  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  34.72 
 
 
639 aa  294  4e-78  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  33.49 
 
 
629 aa  294  4e-78  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.85 
 
 
630 aa  290  5.0000000000000004e-77  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1629  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.77 
 
 
623 aa  290  6e-77  Shewanella pealeana ATCC 700345  Bacteria  normal  0.438395  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  32.85 
 
 
630 aa  290  7e-77  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  35.52 
 
 
630 aa  289  1e-76  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  35.52 
 
 
630 aa  289  1e-76  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  37.8 
 
 
712 aa  287  5e-76  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  34.03 
 
 
630 aa  286  7e-76  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  37.71 
 
 
712 aa  286  7e-76  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
630 aa  285  2.0000000000000002e-75  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  34.3 
 
 
630 aa  283  4.0000000000000003e-75  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.17 
 
 
626 aa  283  7.000000000000001e-75  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1011  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.28 
 
 
624 aa  283  8.000000000000001e-75  Pseudomonas putida W619  Bacteria  normal  0.752503  hitchhiker  0.0000000000251926 
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  33.72 
 
 
623 aa  282  2e-74  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  35.49 
 
 
630 aa  281  3e-74  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_009512  Pput_4352  methyl-accepting chemotaxis sensory transducer  32.63 
 
 
624 aa  280  4e-74  Pseudomonas putida F1  Bacteria  normal  normal  0.0132701 
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  35.49 
 
 
630 aa  281  4e-74  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_008321  Shewmr4_3752  methyl-accepting chemotaxis sensory transducer  33.72 
 
 
623 aa  280  6e-74  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  35.67 
 
 
648 aa  280  7e-74  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_010322  PputGB1_4443  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.63 
 
 
624 aa  279  8e-74  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000033578 
 
 
-
 
NC_002947  PP_1371  methyl-accepting chemotaxis transducer  32.63 
 
 
624 aa  279  1e-73  Pseudomonas putida KT2440  Bacteria  normal  normal  0.318672 
 
 
-
 
NC_010501  PputW619_4580  methyl-accepting chemotaxis sensory transducer  36.19 
 
 
648 aa  278  2e-73  Pseudomonas putida W619  Bacteria  normal  normal  0.0108713 
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  33.39 
 
 
623 aa  277  4e-73  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.28 
 
 
627 aa  275  2.0000000000000002e-72  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
NC_009438  Sputcn32_3017  methyl-accepting chemotaxis sensory transducer  36.18 
 
 
630 aa  274  3e-72  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  34.24 
 
 
626 aa  273  8.000000000000001e-72  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_4557  methyl-accepting chemotaxis protein  33.39 
 
 
623 aa  271  2e-71  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_4274  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.33 
 
 
623 aa  271  2.9999999999999997e-71  Shewanella baltica OS195  Bacteria  normal  normal  0.179842 
 
 
-
 
NC_011663  Sbal223_0194  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.33 
 
 
623 aa  271  2.9999999999999997e-71  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_4141  methyl-accepting chemotaxis sensory transducer  34.33 
 
 
623 aa  271  2.9999999999999997e-71  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0193  methyl-accepting chemotaxis sensory transducer  33.83 
 
 
623 aa  270  4e-71  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  36.25 
 
 
713 aa  270  8e-71  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009438  Sputcn32_0323  methyl-accepting chemotaxis sensory transducer  34.33 
 
 
623 aa  268  2e-70  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.39 
 
 
623 aa  266  5.999999999999999e-70  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_009665  Shew185_2544  methyl-accepting chemotaxis sensory transducer  33.13 
 
 
633 aa  266  7e-70  Shewanella baltica OS185  Bacteria  hitchhiker  0.00517521  n/a   
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  33.52 
 
 
646 aa  265  2e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  35.67 
 
 
647 aa  265  3e-69  Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
714 aa  263  4.999999999999999e-69  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_007492  Pfl01_4382  chemotaxis sensory transducer  37.24 
 
 
738 aa  263  6e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.218372 
 
 
-
 
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  35.47 
 
 
647 aa  263  8e-69  Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_009052  Sbal_0194  methyl-accepting chemotaxis sensory transducer  35.74 
 
 
623 aa  263  1e-68  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  33.33 
 
 
646 aa  262  2e-68  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_009092  Shew_0237  methyl-accepting chemotaxis sensory transducer  31.46 
 
 
632 aa  258  2e-67  Shewanella loihica PV-4  Bacteria  normal  normal  0.997473 
 
 
-
 
NC_009831  Ssed_4216  methyl-accepting chemotaxis sensory transducer  31.64 
 
 
647 aa  257  5e-67  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3984  methyl-accepting chemotaxis sensory transducer  37.83 
 
 
688 aa  257  5e-67  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0525  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.49 
 
 
632 aa  256  7e-67  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010322  PputGB1_0629  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.48 
 
 
647 aa  256  9e-67  Pseudomonas putida GB-1  Bacteria  normal  0.624074  hitchhiker  0.000681907 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  35.73 
 
 
628 aa  256  9e-67  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
716 aa  252  1e-65  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  35.07 
 
 
628 aa  251  4e-65  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_007492  Pfl01_2970  chemotaxis sensory transducer  36.81 
 
 
712 aa  249  1e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4190  methyl-accepting chemotaxis sensory transducer  36.5 
 
 
688 aa  248  2e-64  Pseudomonas putida GB-1  Bacteria  normal  0.251316  normal 
 
 
-
 
NC_008789  Hhal_0549  methyl-accepting chemotaxis sensory transducer  37.95 
 
 
640 aa  248  2e-64  Halorhodospira halophila SL1  Bacteria  normal  0.43692  n/a   
 
 
-
 
NC_007492  Pfl01_3770  chemotaxis sensory transducer  36 
 
 
715 aa  248  2e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  33.8 
 
 
638 aa  247  4e-64  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  34.44 
 
 
628 aa  247  4.9999999999999997e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_1228  methyl-accepting chemotaxis transducer  37.67 
 
 
688 aa  246  9.999999999999999e-64  Pseudomonas putida KT2440  Bacteria  normal  normal  0.739741 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  30.41 
 
 
631 aa  246  9.999999999999999e-64  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  32.99 
 
 
638 aa  245  1.9999999999999999e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_010501  PputW619_2074  methyl-accepting chemotaxis sensory transducer  37.61 
 
 
714 aa  244  3e-63  Pseudomonas putida W619  Bacteria  normal  0.203311  normal 
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  36.43 
 
 
714 aa  243  6e-63  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  33.6 
 
 
638 aa  242  1e-62  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_009512  Pput_1257  methyl-accepting chemotaxis sensory transducer  37.4 
 
 
688 aa  242  1e-62  Pseudomonas putida F1  Bacteria  normal  0.124474  normal 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  33.26 
 
 
639 aa  241  2e-62  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
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