Gene Pmen_3309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_3309 
Symbol 
ID5105782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp3651991 
End bp3653868 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content64% 
IMG OID640504566 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001188794 
Protein GI146308329 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.776822 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAAAA ACCTGCAGTT CAGCCACAAG ATTCTGCTCG CAGCATCGCT GGTGGTGATA 
GTCGCCTTCT CCCTGTTCAC CCTCTACAAC GATTACCTGC AACGCAACGC CATCCGCGAG
GACCTGGAGA GCTACCTGCA GGAGATGGGC AACGTGACCG CCAGCAATAT CCAGAACTGG
CTGTCGGGGC GCATCCTGCT GGTGGAAAGC GCGGCGCAGA CCATAGTCAA TGACAGCAGC
CCGGATCGCG TGGTCAAGCT GCTGGAGCAG AAAGCGCTGA CCTCCTCCTT CGCCTTCACC
TATCTGGGCA CCGAAAGTGG CGGCTTCACC ATGCGCCCGG ACGAGGAAAT GCCCGCCGAT
TACGACCCGC GCGTCCGCCC CTGGTACAAG GACGCCATGG CGGCGGGCGG CACCACGCTC
ACCGAGCCGT ACGTGGATGC GGCCACCGGC GAACTGATCA TCACCATCGC CACGCCGGCC
AGACCGGCCG GCGTGGTGGG CGGCGACCTC AGCCTGCAGA CGCTGGTGAA CATCATCAAC
GCGCTGGATT TCGACGGCAT CGGCTACGCC TTCCTGGTTA GCGCCGACGG CAAGGTTCTG
GTGCACCCGG ACAAGAACCT GGTGATGAAG AATCTCAAGG ACATCTATCC GCAGAACACC
CCGCGCATCA GCAGCGAATT CAGCGAAGCG CAGCTCGACG GCGACACCCG CATCCTCACC
TTCACCCCGG TCAAGGGTCT GCCCTCGGTC AACTGGCATA TCGGCCTGTC GATCGACAAG
GACAAGGCCT ACGCCATGCT CACCGAGTTC CGCGCCTCGG CCATCATCGC CACGGTGATC
GCCGTGGTGC TGATCATCGC CCTGCTCGGC CTGCTGATCC GCGTGCTGAT GCAGCCGCTG
ACCACCATGG GCAAGGCCAT GGAGGATATC GCCAAGGGTG AGGGCGACCT GACCAAGCGC
CTGGCGATTC AGTCCAATGA CGAATTCGGC GCCCTGGCGC GCTCGTTCAA CCAGTTCGTC
GAACGTATCC ACAGCTCGAT CCGCGAGGTG TCGTCGGCAA CGGTCCAGGT CAACGAAGTG
GCCAAGCTGG TGCTGGGCGC CTCCAACTCC TCAATGGCCA ACTCCGACGA ACAGGCCAGC
CGCACCAACA GCGTCGCCGC GGCGATCAAC CAGCTCGGCG CCGCTGCCCA GGAGATCGCG
CGCAACGCCG CCGACGCCTC GAACCAGGCC TCCGACGCCC GCCACCAGGC CGAAGACGGC
GGCAAGGTGG TGCAGCAGGC GATTCACTCC ATGAGCGAGC TGTCGCACAA GATCAGCGAC
GCCTGCGCCA AGATCGAGAT GCTCAACAGC AAGACCGTGG ACATCGGCCA GATCCTCGAA
GTGATCAAGA GCATCTCCCA GCAGACCAAC CTGCTCGCGC TCAACGCCGC CATCGAGGCG
GCCCGTGCCG GCGAGGCCGG GCGTGGTTTC GCCGTGGTGG CCGACGAAGT GCGCAACCTG
GCGCACCGTA CCCAGGAGTC GGCGCAGGAA ATCGAGAAGA TGATCGAGGA ACTGCAGATC
GGCTCGCGCG AATCGGTCAC GACCATGACC GAAAGCCAGC GCTACAGCGA GGAAAGCGTG
GAGATCGCCA ACCAGGCCGG CGAGCGTCTG GGCACGGTGA CTGCCCGTAT CGGCGAGATC
GACGGAATGA ACCAGTCGGT GGCCACCGCC ACCGAGGAGC AGACCTCGGT GATCGAGTCG
CTGAACATGG ACATCATCGA GATCAACACC CTCAACCAGG AGGGCGTGGA AAACCTGCAG
GCCACCCTGC GCGCCTGCGG CGATCTGGAA CAGCAGGCCG CGCGCCTCAA GCAGCTGGTC
GACAGCTTCC GAATCTGA
 
Protein sequence
MTKNLQFSHK ILLAASLVVI VAFSLFTLYN DYLQRNAIRE DLESYLQEMG NVTASNIQNW 
LSGRILLVES AAQTIVNDSS PDRVVKLLEQ KALTSSFAFT YLGTESGGFT MRPDEEMPAD
YDPRVRPWYK DAMAAGGTTL TEPYVDAATG ELIITIATPA RPAGVVGGDL SLQTLVNIIN
ALDFDGIGYA FLVSADGKVL VHPDKNLVMK NLKDIYPQNT PRISSEFSEA QLDGDTRILT
FTPVKGLPSV NWHIGLSIDK DKAYAMLTEF RASAIIATVI AVVLIIALLG LLIRVLMQPL
TTMGKAMEDI AKGEGDLTKR LAIQSNDEFG ALARSFNQFV ERIHSSIREV SSATVQVNEV
AKLVLGASNS SMANSDEQAS RTNSVAAAIN QLGAAAQEIA RNAADASNQA SDARHQAEDG
GKVVQQAIHS MSELSHKISD ACAKIEMLNS KTVDIGQILE VIKSISQQTN LLALNAAIEA
ARAGEAGRGF AVVADEVRNL AHRTQESAQE IEKMIEELQI GSRESVTTMT ESQRYSEESV
EIANQAGERL GTVTARIGEI DGMNQSVATA TEEQTSVIES LNMDIIEINT LNQEGVENLQ
ATLRACGDLE QQAARLKQLV DSFRI