Gene SO_4557 details

Gene Information

• Locus tag: SO_4557
• ID: 1172143
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4753426
• End bp: 4755297
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637346269
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_720074
• Protein GI: 24376031
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACTCAT ACTCGCTTAA ACAAAAGATC CTGATTTCGG TCGTGATTGC GCTTTCCCTC 
GTGATTGGCT TGCTCTCATG GCAAAGCTAT TCCAGCCAAA AGTCATTGTT GCTGCAAAAT 
AGTTTAGAAC AGGTGCAGCG ACTGGGCGAT CAACAGGCTG AACGCATTCA AGAATGGCTC 
GCTGGACGTC AGGATATTGT GGGGGCGTTG GCATCTAAGG TTGAAGGTGA CAGTTTAAAC 
GCATTACAGC AGGCACAGGC TTCGGGCCGA TTTCAGCTTA CTTACTACGG TACGCAAGCG 
GGGCAGATGC TGGACTCCGA CCTCAGCATA GATCGTACAG GTTACGATCC GAGAACTCGC 
CCTTGGTATA AGCAAGCGAC AAATGAGCGT GGGCTTATCC TGACTAAGCC CTATGTCGAT 
GTGGCATACA ATGTGTTAGT GGTTACTATG GCGCAGGCGG TTTCCCAAGG TGTGGTTGGG 
GGCGATCTGT CGATTGCGAG TTTGGTAGAA AGCGTCAATC GTATGACCTT ACCAGCCAAT 
GGTTACGCCA TTATGATGCA CCAAGATGGC ACTGTGATCG CTTACAAAGA TACCTCTAAA 
GCGATGAAGC CTGTAAGCGA TATCGACAAC GACCTTAACC ATAATTTACC CCAACAGAGC 
CGTCAGGCGG GCACATGGCT GCCGATGTAT TTCGAACATG AAAGCCGCGA TAAGTTAGTT 
TGGGGTGTCG ATATTCCCAA TACCGATTGG GAACTGGTGA TAGTGCTGGA CAAAGAGACT 
CTTGAGGCGC CATTAACCAA TTTACTGCTG ACTCAATTGG GTCTTTCAGC CGTGGTGTTA 
TTGCTGAGCG TATTGGCTAT TTCTTGGTTG GTGAATCTAT TATTGGGGCC ATTAGGACGC 
GTATCGCAGG CGCTTGCGCG CATTGCCGAT GGTAACGGTG ACTTAACCCA ACGTATTGAG 
GTCGATACTC AAGATGAAGT GGGCGTACTG GCCGATAGCT TTAACCGTTT TGTTGGCAGT 
CAGCATCAGC TCATCAGTCA TATTCGCCAT TTGGCCGGTG AGCTGGATGC GGATGCTGAG 
CACAGTCTTA AAACCAACCA TCTTGCCGTG GCCGAATTAC AACGTCAGCA GCAGGAAGTC 
GCTATGGTCG CGACTGCGGT GACTGAAATG GCGAGCGCGA CTAATGAAAT TGCCGCCAAT 
GCCGAAAATA CCGCAACTGC GGCACAGCAA TCAGCAGCGA GCAGCTTCCA AGGGAAAGAG 
TTAGTTAATA AAACCCGTAG TTCAATTAAT TCCTTGGCGG ATGAAGTGAC TCAAGCGACT 
GAGGTCATTG AAGATTTAAG CCGTCATGCC CAGTCTATTT CCAGCATTTT GGCCACAATT 
CAAGGCATTG CAGAGCAGAC TAACCTGTTA GCCCTCAATG CGGCAATTGA GGCTGCCCGT 
GCTGGCGAGC AGGGGCGTGG TTTTGCGGTT GTGGCAGATG AGGTACGAGT GCTATCGCGC 
CGTACCCAAG ATTCGACCCA AGAAGTGCAT GCAACCATTG AGACATTGCA ACGAACAACG 
GCGAAGGCTG TTAGCTTGAT GGAAAGTAGT CAAATGTTGG CGGGCAATAG CGTTGAAGAT 
GCCAATGCAG CGGTCAAGGC ACTGGAAGAA ATCACTCAAG CCGTGAATGT GATTTCGGAT 
ATGGCGGGTC AAATTGCCAC CGCCGCCGAG GAGCAAACTC AAGTGACAGG TGAAATCACC 
CAAAATACGG TGGCGATTAA GGATGTGACC GACGAAATCA CCGAGGCGGC GAAGTCGGAT 
CTCACTCAAG CTCAGGCATT AAAGGCGCGC GCCAATGATC TCAATGCTCA GGTAGCGACG 
TTTATTCTGT AA 

 

Protein sequence

MNSYSLKQKI LISVVIALSL VIGLLSWQSY SSQKSLLLQN SLEQVQRLGD QQAERIQEWL 
AGRQDIVGAL ASKVEGDSLN ALQQAQASGR FQLTYYGTQA GQMLDSDLSI DRTGYDPRTR 
PWYKQATNER GLILTKPYVD VAYNVLVVTM AQAVSQGVVG GDLSIASLVE SVNRMTLPAN 
GYAIMMHQDG TVIAYKDTSK AMKPVSDIDN DLNHNLPQQS RQAGTWLPMY FEHESRDKLV 
WGVDIPNTDW ELVIVLDKET LEAPLTNLLL TQLGLSAVVL LLSVLAISWL VNLLLGPLGR 
VSQALARIAD GNGDLTQRIE VDTQDEVGVL ADSFNRFVGS QHQLISHIRH LAGELDADAE 
HSLKTNHLAV AELQRQQQEV AMVATAVTEM ASATNEIAAN AENTATAAQQ SAASSFQGKE 
LVNKTRSSIN SLADEVTQAT EVIEDLSRHA QSISSILATI QGIAEQTNLL ALNAAIEAAR 
AGEQGRGFAV VADEVRVLSR RTQDSTQEVH ATIETLQRTT AKAVSLMESS QMLAGNSVED 
ANAAVKALEE ITQAVNVISD MAGQIATAAE EQTQVTGEIT QNTVAIKDVT DEITEAAKSD 
LTQAQALKAR ANDLNAQVAT FIL