Gene Pput_4352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4352 
Symbol 
ID5194307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4869614 
End bp4871488 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content61% 
IMG OID640588829 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001269659 
Protein GI148549557 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0132701 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAA GCCTTCGTTT CAGCCACAAG ATTCTTTTGG CGGCATCACT GATCGTGATA 
CTCGCCTTCA GCCTTTTCAC CCTCTACAAC GATTACCTCC AGCGTAATGC GATCCGCGAG
GACCTGGAAA ACTATCTGGC TGAAATGGGC ACCTCCACGT CGACCAACAT TCGCAACCTG
TTCGAGGGCC GGATAAAGCT GGTGGAGAAC CTGGCGCAGA ACATTGCCCA AGACCCAGCC
AACGCCGAAA CCCTGATGGG TCAGAATGCG CTGATATCCA GCTTCCTCAC GGTCTACCTG
GGCAAAGTCG ACGGCGGTTT CAGCGTACGC CCGGACGCGA AGATGCCCGA CGGCTACGAC
CCGCGCACCC GCCCTTGGTA CAAGGACGGC ATGAACGCCA GCGGCGCGAC GCTGACCGAA
CCCTACATCG ACATGACCAC CAACAAGATG GTCATTGGTA TCCTCAGCAA GGTCTCCAGC
AGCGTGGGCG TGGTCGGCGG CGACCTGGCC CTGGACGGCC TGGTGCAGAT CATCAACTCG
CTGAACTTCG GCGGCATGGG ATACGCCTTC CTGGTCAACG ACCAGGGCAA GATCCTGGTA
CACCCGGATA AGGATCTGGT CATGAAATCG CTGTCGGACC TGTTCCCGCA GCGCACGCCG
AAACTGACCG GTGAGCTGAC CGAAGTGCAA AGCGAGGGCC AGACCCGCCT GCTGACCTTC
AGCCCGATTA CCGGCCTGCC GTCGGCAAAC TGGTACATCG GCCTGTCGGT GGACAAGGAC
AAGGCCTTCT CGATGCTCAG CACCTTCCGC ACCTCGGCGG TGATCGCCAC GGTGGTGGCA
GTGGTGATCA TCATCGGCCT GCTCGGCTTG CTGATCCGCG TGTTGATGCA GCCGCTGCAC
ACCATGACCC GCGCCATGGA AGACATTGCC GAAGGTGAAG GCGACCTGAC CAAGCGCCTG
CACATCCACA ACCACGACGA ATTCGGTGTC CTCGGCAACG CCTTCAACCG CTTCGTCGAG
CGCATTCACA GCAGCATTCG CGAAGTGTCC TCGGCCACCG AGCAGGTCAA CGAAGTAGCC
CTGCGGGTGA TCAGCGCTTC GAATTCGTCG ATGACCAACT CCGACGAGCA GTCCAACCGG
ACCAACAGTG TCGCCGCCGC CATCAATGAA TTGGGCGCTG CGGCTCAGGA AATCGCCGGC
AACGCCGCCC AAGCTTCGCA GCACGCAAGC TCCGCGCGCC TGTTGGCCGA AGAAGGCCAG
CAAGTGGTCG AGCGCAACAT TGCCGCGATG AACCGCCTGT CCGACCTGAT CGTCACCTCC
AGCGCGCACA TCGAGACACT GAACAGCAAG ACCGTGAATA TCGGCCAGAT CCTGGAAGTG
ATCACCAGCA TTTCCCAGCA GACCAACCTG CTGGCGCTGA ACGCCGCCAT CGAAGCGGCC
CGCGCCGGTG AGGCCGGGCG TGGCTTTGCC GTGGTCGCCG ATGAGGTGCG CAATCTGGCG
CACCGCACCC AGGAGTCGGC GCAGCAAGTG CAGACCATGA TCGAAGAGCT GCAGGTCGGT
GCCCGCGAGT CGGTCGACAC CATGGACCAG AGCCAGCGCC ACAGCCAGGA CAGCATGCAG
ATCGCCAACC AGGCGGGTGA GCGACTGGAC AGCGTTACCG TGCGCATTGG CGAGATCGAC
GGCATGAACC AGTCGGTGGC CACTGCCACC GAAGAGCAGA CCGCCGTGGT CGAGGCGATC
AACATGGACA TCAACGAGAT CAACATGCTC AACCAGGAAG GCGTGGAGAA CCTGCAAGCG
ACCCTGCGCG CCTGCTCCGA CCTCGAGCAG CAGGCTGGCC GCCTGAAGCA CCTGGTGGGC
AGCTTCCGTA TCTGA
 
Protein sequence
MNKSLRFSHK ILLAASLIVI LAFSLFTLYN DYLQRNAIRE DLENYLAEMG TSTSTNIRNL 
FEGRIKLVEN LAQNIAQDPA NAETLMGQNA LISSFLTVYL GKVDGGFSVR PDAKMPDGYD
PRTRPWYKDG MNASGATLTE PYIDMTTNKM VIGILSKVSS SVGVVGGDLA LDGLVQIINS
LNFGGMGYAF LVNDQGKILV HPDKDLVMKS LSDLFPQRTP KLTGELTEVQ SEGQTRLLTF
SPITGLPSAN WYIGLSVDKD KAFSMLSTFR TSAVIATVVA VVIIIGLLGL LIRVLMQPLH
TMTRAMEDIA EGEGDLTKRL HIHNHDEFGV LGNAFNRFVE RIHSSIREVS SATEQVNEVA
LRVISASNSS MTNSDEQSNR TNSVAAAINE LGAAAQEIAG NAAQASQHAS SARLLAEEGQ
QVVERNIAAM NRLSDLIVTS SAHIETLNSK TVNIGQILEV ITSISQQTNL LALNAAIEAA
RAGEAGRGFA VVADEVRNLA HRTQESAQQV QTMIEELQVG ARESVDTMDQ SQRHSQDSMQ
IANQAGERLD SVTVRIGEID GMNQSVATAT EEQTAVVEAI NMDINEINML NQEGVENLQA
TLRACSDLEQ QAGRLKHLVG SFRI