Gene VC0395_A1741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1741 
Symbol 
ID5137225 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1861832 
End bp1863703 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content48% 
IMG OID640533198 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001217680 
Protein GI147673902 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGTTTA GTCAGAAGAT CGTTGCCGCT TCATCGGCAT TACTACTCTG TGTTATTGCA 
CTGCTGTCAT TCCAACAGCT CTCCACCGTT CGTGAGGAGA TTGAGTCACT CGTTCAAGAT
AGCTTGATGG AGATGGTGAA AGGGGTCAAA AACACAATTG AGTCAGATCT TGCCAGTAAA
AAGGGATTAG CGCAGTCGAC CACTGAGATT TTACAGCTTG ATCCAACCAA CAAAGCATTT
GCTAAGAGTG TTTTAGAATC CCCCAACCTA AAAGGGAGCT TTTTAGCGAT TGGTCTTGGC
TATGAATCTG ATGCGACCGT GGTCGAAAAT GATGATGGTT GGGAGCCAAA CGCAGATTAC
GACCCACGTA AGCGTCCTTG GTATGTGGAT GCTAAGCGTG AAAGAAAGCT AGTGGTCACC
GAGCCTTATG TCGATATCTC GACCAAGAAA ATCATCATCT CTATCGGTAC GCCAGTTTAT
CAGCAGAGTA ACTTTGTTGG TGCCATGTTC TATGACGTAG AGCTGACTCA GTTGGCGCAA
TTGGTTAACT CTGTGAATCT GTTTGATGCG GGTTACTTAT TCATCACGAC GAAAGACGGC
GTTACCATTG CTCACCCGAA TGCGGAAAAC AATGGCGAAA AATTCAGTCA GTTTTTACCG
AATGTCGATC TGAAAGAAGG AACCCAACGG ATTGAGCTGG ACGGTAAATA CTATCTGGTT
AAATTTGCCC AAGTGCCATC TGAGAGTTGG TATATCGGCG CTGTGGTGGA TGAATCGATC
GCGTTTGCGA TGGTGGATGA TTTACGCCAC AGCTCATTGA TTTATACCGT TATTGGCGTA
TTGCTCAGTA TCATTGGCTT AAGCTTCCTA ATCAAAGTGC TGATGAAGCC TCTGGGTGCG
CTGAGTCGAG CCATTGAAGA TGTAGCTTCA GGTCAAGGGG ATTTAACTAA ACGTTTGGAC
ACCAACACCG ATATGGAATT TGCAATATTG GCGAAGGATT TCAACGTGTT CTGCGAAACG
TTGCAAAAAC GTATCCAACA CCTAAAAGGG ATTGGCGCGG AAATCATGCA TGGTACCGAG
CAAACGGTAC TGGGTGCGCA TGAGTCGGCC AGTGCCATGG CGCAGCAGTT GCAAGAGCTG
GAGCAGCTCG CGACGGCAAT GCATGAGATG GCGGTAACGG CGACAGAAGT AGCGAATAAC
GCGCAAGGAG CAGCGGCTGC GGCTCACGAG GCTGATGAAG CTTCACAAGA TGGCAGTAAA
GTGGTGAGTG ATACCACGCG ATCGATTGAT GCGCTTTCTG CTCGTATCGA ACAAGCGGTA
GAAGAGGTCA AAGGACTAGA AGTGGCGACC GGAAATATCG AAACCATTTT GAAAGTTATT
AACGATATTG CTGATCAAAC CAACTTGCTG GCACTTAATG CGGCGATTGA AGCCGCGCGC
GCGGGGGAAT CGGGTCGAGG TTTTGCGGTG GTTGCCGATG AAGTTCGGAC GTTGGCACAG
CGTACGCAAC AATCGACCAC GGAAATTCGC AATATGATCG AACAGTTGCA AAGCGGTGCG
AGTGCGGTTT CTGCTGCGAT GAATGAGAGT AAGTACACGG CGGATGATGC TGTGCAGAAG
GCGCAGCTTG CTAATGAATC TCTGCAACGG ATTCGTGGTG CTATCCAACG GATCAGCGAT
ATGAACATGC AGATTGCTTC TGCAGCGGAA GAGCAAAGTC TCGTTGCCGA GGAGATCAAC
ACCAATACGG TGAAGATTAA AGACCTCTCG ACTCAGGTGG CGGACTCCGC TAAATCAGCG
AGTATGGCCA TGGAAGTACA AACCGAAAAC GTGCGCGAGC AAGGCAAACT CCTCAACACC
TTTATCGTGT AG
 
Protein sequence
MRFSQKIVAA SSALLLCVIA LLSFQQLSTV REEIESLVQD SLMEMVKGVK NTIESDLASK 
KGLAQSTTEI LQLDPTNKAF AKSVLESPNL KGSFLAIGLG YESDATVVEN DDGWEPNADY
DPRKRPWYVD AKRERKLVVT EPYVDISTKK IIISIGTPVY QQSNFVGAMF YDVELTQLAQ
LVNSVNLFDA GYLFITTKDG VTIAHPNAEN NGEKFSQFLP NVDLKEGTQR IELDGKYYLV
KFAQVPSESW YIGAVVDESI AFAMVDDLRH SSLIYTVIGV LLSIIGLSFL IKVLMKPLGA
LSRAIEDVAS GQGDLTKRLD TNTDMEFAIL AKDFNVFCET LQKRIQHLKG IGAEIMHGTE
QTVLGAHESA SAMAQQLQEL EQLATAMHEM AVTATEVANN AQGAAAAAHE ADEASQDGSK
VVSDTTRSID ALSARIEQAV EEVKGLEVAT GNIETILKVI NDIADQTNLL ALNAAIEAAR
AGESGRGFAV VADEVRTLAQ RTQQSTTEIR NMIEQLQSGA SAVSAAMNES KYTADDAVQK
AQLANESLQR IRGAIQRISD MNMQIASAAE EQSLVAEEIN TNTVKIKDLS TQVADSAKSA
SMAMEVQTEN VREQGKLLNT FIV