Gene VC0395_A1741 details

Gene Information

• Locus tag: VC0395_A1741
• ID: 5137225
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 1861832
• End bp: 1863703
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640533198
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_001217680
• Protein GI: 147673902
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGTTTA GTCAGAAGAT CGTTGCCGCT TCATCGGCAT TACTACTCTG TGTTATTGCA 
CTGCTGTCAT TCCAACAGCT CTCCACCGTT CGTGAGGAGA TTGAGTCACT CGTTCAAGAT 
AGCTTGATGG AGATGGTGAA AGGGGTCAAA AACACAATTG AGTCAGATCT TGCCAGTAAA 
AAGGGATTAG CGCAGTCGAC CACTGAGATT TTACAGCTTG ATCCAACCAA CAAAGCATTT 
GCTAAGAGTG TTTTAGAATC CCCCAACCTA AAAGGGAGCT TTTTAGCGAT TGGTCTTGGC 
TATGAATCTG ATGCGACCGT GGTCGAAAAT GATGATGGTT GGGAGCCAAA CGCAGATTAC 
GACCCACGTA AGCGTCCTTG GTATGTGGAT GCTAAGCGTG AAAGAAAGCT AGTGGTCACC 
GAGCCTTATG TCGATATCTC GACCAAGAAA ATCATCATCT CTATCGGTAC GCCAGTTTAT 
CAGCAGAGTA ACTTTGTTGG TGCCATGTTC TATGACGTAG AGCTGACTCA GTTGGCGCAA 
TTGGTTAACT CTGTGAATCT GTTTGATGCG GGTTACTTAT TCATCACGAC GAAAGACGGC 
GTTACCATTG CTCACCCGAA TGCGGAAAAC AATGGCGAAA AATTCAGTCA GTTTTTACCG 
AATGTCGATC TGAAAGAAGG AACCCAACGG ATTGAGCTGG ACGGTAAATA CTATCTGGTT 
AAATTTGCCC AAGTGCCATC TGAGAGTTGG TATATCGGCG CTGTGGTGGA TGAATCGATC 
GCGTTTGCGA TGGTGGATGA TTTACGCCAC AGCTCATTGA TTTATACCGT TATTGGCGTA 
TTGCTCAGTA TCATTGGCTT AAGCTTCCTA ATCAAAGTGC TGATGAAGCC TCTGGGTGCG 
CTGAGTCGAG CCATTGAAGA TGTAGCTTCA GGTCAAGGGG ATTTAACTAA ACGTTTGGAC 
ACCAACACCG ATATGGAATT TGCAATATTG GCGAAGGATT TCAACGTGTT CTGCGAAACG 
TTGCAAAAAC GTATCCAACA CCTAAAAGGG ATTGGCGCGG AAATCATGCA TGGTACCGAG 
CAAACGGTAC TGGGTGCGCA TGAGTCGGCC AGTGCCATGG CGCAGCAGTT GCAAGAGCTG 
GAGCAGCTCG CGACGGCAAT GCATGAGATG GCGGTAACGG CGACAGAAGT AGCGAATAAC 
GCGCAAGGAG CAGCGGCTGC GGCTCACGAG GCTGATGAAG CTTCACAAGA TGGCAGTAAA 
GTGGTGAGTG ATACCACGCG ATCGATTGAT GCGCTTTCTG CTCGTATCGA ACAAGCGGTA 
GAAGAGGTCA AAGGACTAGA AGTGGCGACC GGAAATATCG AAACCATTTT GAAAGTTATT 
AACGATATTG CTGATCAAAC CAACTTGCTG GCACTTAATG CGGCGATTGA AGCCGCGCGC 
GCGGGGGAAT CGGGTCGAGG TTTTGCGGTG GTTGCCGATG AAGTTCGGAC GTTGGCACAG 
CGTACGCAAC AATCGACCAC GGAAATTCGC AATATGATCG AACAGTTGCA AAGCGGTGCG 
AGTGCGGTTT CTGCTGCGAT GAATGAGAGT AAGTACACGG CGGATGATGC TGTGCAGAAG 
GCGCAGCTTG CTAATGAATC TCTGCAACGG ATTCGTGGTG CTATCCAACG GATCAGCGAT 
ATGAACATGC AGATTGCTTC TGCAGCGGAA GAGCAAAGTC TCGTTGCCGA GGAGATCAAC 
ACCAATACGG TGAAGATTAA AGACCTCTCG ACTCAGGTGG CGGACTCCGC TAAATCAGCG 
AGTATGGCCA TGGAAGTACA AACCGAAAAC GTGCGCGAGC AAGGCAAACT CCTCAACACC 
TTTATCGTGT AG 

 

Protein sequence

MRFSQKIVAA SSALLLCVIA LLSFQQLSTV REEIESLVQD SLMEMVKGVK NTIESDLASK 
KGLAQSTTEI LQLDPTNKAF AKSVLESPNL KGSFLAIGLG YESDATVVEN DDGWEPNADY 
DPRKRPWYVD AKRERKLVVT EPYVDISTKK IIISIGTPVY QQSNFVGAMF YDVELTQLAQ 
LVNSVNLFDA GYLFITTKDG VTIAHPNAEN NGEKFSQFLP NVDLKEGTQR IELDGKYYLV 
KFAQVPSESW YIGAVVDESI AFAMVDDLRH SSLIYTVIGV LLSIIGLSFL IKVLMKPLGA 
LSRAIEDVAS GQGDLTKRLD TNTDMEFAIL AKDFNVFCET LQKRIQHLKG IGAEIMHGTE 
QTVLGAHESA SAMAQQLQEL EQLATAMHEM AVTATEVANN AQGAAAAAHE ADEASQDGSK 
VVSDTTRSID ALSARIEQAV EEVKGLEVAT GNIETILKVI NDIADQTNLL ALNAAIEAAR 
AGESGRGFAV VADEVRTLAQ RTQQSTTEIR NMIEQLQSGA SAVSAAMNES KYTADDAVQK 
AQLANESLQR IRGAIQRISD MNMQIASAAE EQSLVAEEIN TNTVKIKDLS TQVADSAKSA 
SMAMEVQTEN VREQGKLLNT FIV