Gene Spea_1629 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1629 
Symbol 
ID5662026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1973037 
End bp1974908 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content47% 
IMG OID641236217 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001501489 
Protein GI157961455 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.438395 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTCAT ATTCGCTCAA GACAAAGATC CTTCTATCAG TTGTGCTAGC CTTTTCCGTC 
GTAATAGGAC TGCTATCATG GCAAAGTTAT TCGAGCCAAA AGCAACTGTT AATGAAAAGC
AGTGCCGATC AAGTGCGCCA ACTTGGTGAG CAACAAGCAA AACAGATCCA AGAGTGGCTA
GCCGATCGTA AAAGAATCGT AGCCGCAATT GCTGAAAAAG TTGATGGCGA TAGCCTAAAT
GTTCTGCAAC AGGCTCAACT ATCAGGCCCT TTTCAATTGT CCTATTTCGG TTCTCAATCA
GGCCAAATGT TAGATTCAGA TCCTAGCATT GATCGTAGCG GTTACGATCC TCGCAGCCGC
GGCTGGTATC AACAAGCCAT CGCCAAGCAA ACTTCAATTC TAACCAAACC TTATATCGAT
GTTGCCTACA ATATTCTCGT CGTCACTATG GCACAACCCG CTAAAGGTGG TGTGGTTGGC
AGCGACTTGT CGATTGCTAG CCTAGTGGAT AGCGTTAACA ATATGCAGTT ACCTGCGAAG
GGCTACGCCA TTATGATGCA TAAAGATGGC ACCGTTATCG CGTATAAAGA CCATGCTAAA
TCAATGGGGC CAATACAGAA TATCGACCGT CAGCTTAACG CTCAACTCCC TTCTAAAAGC
CGCCAAACAG ATAGCTTATT ACCGCTTTAT TTTGAAAGTG AAGGGCGTGA CAAGCTAGTG
TGGGGCTCTG AGATCCCAAA TACTGACTGG GAACTTATCT TTGTTCTCGA TAAAGAAACC
TTAGAAGCGC CGTTAAGTAA ATTACTGCTG ACCCAACTTG GCTTGTCAGC ACTTGCTCTC
GTCTTTAGCG TCCTAGCTAT CTCATGGTTC TTAACCATTT TACTCGCGCC ACTTGGCCGA
GTATCACAAG CCTTAGCCCA TATTGCTGAC GGTAATGGCG ATCTGACTCA ACGCATCGAA
GTAGATACTC AGGATGAAGT GGCTGTACTA GCTGCAAGCT TTAACCGGTT TGTGGCAAGC
CAACACCAAC TAATTAGTCA TATTCGACAG CTAGCTGGTG AGTTAGATAG CGATGCCCAG
CACAGCTTGG CGACCAATCA AACGACAGTA GATGAGTTAC AACGCCAGCA GCAAGAAGTG
GCTATGGTTG CAACAGCCGT AACCGAAATG GCCAGTGCCA CCCATGAAAT CGCCGCTAAT
GCGGAGAATA CTGCTACCGC AGCTCAGCAG TCGGCAACAA GTAGTGAAGA AGGCAAAGGC
TTAGTCGATA AGACTCGTAG CACAATTAAC TCGCTGGCAA ATGAAGTAGG TGAAGCTACG
GATGTTATTG GTGAGCTCAA TCTACATGCT CAAGCCATCT CTGGTATTTT AACTACCATT
CAAGGCATTG CAGAGCAAAC TAACCTATTA GCATTAAACG CTGCGATTGA AGCGGCCCGC
GCCGGCGAGC AAGGCCGTGG CTTTGCGGTT GTTGCCGATG AAGTCAGAGT CTTATCACGC
CGTACTCAGG ACTCAACTCA AGAGATCTAC ACCACTATCG AGACCTTGCA AAGCACCACT
AAAAAAGCGG TACTCTTGAT GCAAAGTAGC CAAGGCTTGG CGAGCGACAG TGTCACCGAT
GTCAACGCCG CCAGCAAAGC ACTTGAAGAG ATCACTCAGG CGGTCAATGT GATCTCAGAT
ATGGCAAGTC AAATAGCGAC TGCGGCCGAG GAGCAAACTC AGGTGACCAA TGAGATCACC
CAAAACACCG TCGCGATTAA GGATGTCACA GATGACATTA CCGAGTCGGC GCTTGAGCAT
CTGAATCAAG CCCAAGCGTT AAAAGATAGA GCCGATAATC TAAATTCAAA GGTCGATACC
TTTATCTTGT AA
 
Protein sequence
MNSYSLKTKI LLSVVLAFSV VIGLLSWQSY SSQKQLLMKS SADQVRQLGE QQAKQIQEWL 
ADRKRIVAAI AEKVDGDSLN VLQQAQLSGP FQLSYFGSQS GQMLDSDPSI DRSGYDPRSR
GWYQQAIAKQ TSILTKPYID VAYNILVVTM AQPAKGGVVG SDLSIASLVD SVNNMQLPAK
GYAIMMHKDG TVIAYKDHAK SMGPIQNIDR QLNAQLPSKS RQTDSLLPLY FESEGRDKLV
WGSEIPNTDW ELIFVLDKET LEAPLSKLLL TQLGLSALAL VFSVLAISWF LTILLAPLGR
VSQALAHIAD GNGDLTQRIE VDTQDEVAVL AASFNRFVAS QHQLISHIRQ LAGELDSDAQ
HSLATNQTTV DELQRQQQEV AMVATAVTEM ASATHEIAAN AENTATAAQQ SATSSEEGKG
LVDKTRSTIN SLANEVGEAT DVIGELNLHA QAISGILTTI QGIAEQTNLL ALNAAIEAAR
AGEQGRGFAV VADEVRVLSR RTQDSTQEIY TTIETLQSTT KKAVLLMQSS QGLASDSVTD
VNAASKALEE ITQAVNVISD MASQIATAAE EQTQVTNEIT QNTVAIKDVT DDITESALEH
LNQAQALKDR ADNLNSKVDT FIL