Gene VC0395_A0365 details

Gene Information

• Locus tag: VC0395_A0365
• Symbol: acfB
• ID: 5137124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 392234
• End bp: 394114
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 640531823
• Product: accessory colonization factor AcfB
• Protein accession: YP_001216321
• Protein GI: 147673778
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTTTT CTATCAAGTT ACTAATGATT TTTACATCAA TTATAATTAC TATTTCATCT 
ATCCTTACTT ACTTTCAGAT GCATGGAACC AATGAATATC TTGATCGTAC GATAAAAGAT 
ACTATTTCTG AAACGCTAGA CTCTTTGGAA GATAAAATAA ATCTTTCTAT TGAGTCCAAG 
GTCGATGTGT CAAAATCTGT TATCGACATT TATGAAAATT TACTGGAGGG GGAATCCCCT 
CTCAGTAAAT TTAAGGATGT TGATGTCAAT CATCTTTCAA ATGTTTTTCA ATTGTTCGGA 
TATGCTGATG AAAGAACAGG AGAGATCATT ACTAATGACC CAAACTTTAA AGTGCCTACA 
GGATTCGATC CAAGGACTCG ATCGTGGTAT TTAAATGCAA AAAAATTGAA TACCTTTAGT 
TTGTCTGAGC CGTATGTCGA TCTCATTACA GAGAAGTTAA TGGTGACAAC AAGTGCACCA 
ATATATAATA AAAACGATTT AACAGGAGTT ATATTTTTTG ATATACCACT AGATGACGTT 
CAGGAATTAA TTAAAAGCTA CAATCCATTT GATGCCGGCA CGATTTTTAT CGTTGATAAC 
AGTGGGAAAA TAATTTTCGG TAATAAAAAT GATATATCGG GTAAAAATTT ATTTGGAGAC 
TTTGATAGCT TCCCTCTATC GGTAAGTGAG TCAAAAACGA AAGATAAAAA TGGGGTAAAT 
TACGATGTAT TCATCAAAAT GTCAGACTTT GGCGATTGGA ATCTTGTTTC TATTATCGAC 
CATGATAAAG CACGCTCTGA TATTATCACG TTGAGAAACA ATAGTATATT TACTGCCGTC 
ATTTTAGCAA GTGTTTTCTT TGCTATCTTG TTGTTTACTA TGCGGTTAAT GCTGAAGCCA 
TTGCATCAAT TAACCGATGC AATGGTAAAT ATTTCATCGG GCAGTGCTGA TCTTACGGTT 
CGTATCCCGA ATAGTACGGA TCAAGAGTTT TCAAAAATAA TAAATTCCTT TAACATTTTT 
GTTGGTAATC TGCAATCTAT TGTGTCGGAG GTTAAAATGA ACTCAGAAAA AATAAATTGC 
ATAACTACTG AAACACAAGA GCTAGTCGAA GTTTGCAATA ATAGCGTAGC TGATCAGTAT 
CGTGAACTTG ATATGCTAGC TAGCTCAATG AATGAGATGG TGGCAACATC TAATCAGATT 
GCACAAATTA CATCCGAAGC ATCAGAGATC ACATCTAAGA TTAACGGTCA AGTGAATGAA 
GGAGTCGGTG CTGTTTCTTC TGTTACCGAA AGTGTAGGTA ATTTAGTTGA GAAGTTGGAT 
AAGACGAAAT CTGTTATCCA AGATCTTAAT CGCCAAACTC AAAATATAGA TGTTATTTTG 
AAGGCTATTA ATGATATTGC TGACCAAACA AACCTTCTTG CTCTTAATGC TGCAATTGAG 
GCTGCACGAG CTGGGGAAAA TGGACGAGGT TTTGCTGTGG TTGCTGATGA GGTACGCAGC 
CTAGCAATAA AGACACAAGA GTCTACTAAA AATATAGGAA GTATTATCCA TATATTACAA 
GAAAACTCTT TGCTATCCGT TCATGTTATG GATGAAAGTT TTAATATTGC CTCTGAAACT 
ATGACTATAT CAGCTGATTC AAAACAATGT TTAGACAATA TTAGTCAATC AGTAATACAA 
ATTGTTGATA TCACAAATCA AGTAGCTACA GCTGCTTACG AACAAAGTCA CGTATCAGAG 
GAAATAAACA GCAACTCTAT TTCTATAAAA GATAAAGCAG ATACCTTATC AAGTTTGGGT 
AATAAGATTT CTCAACAGGC TTATTCTCAA AAAGCACTGA TTGGTCATCA AGATGATTTA 
ATCAGTAAGT TTATCATTTA A 

 

Protein sequence

MKFSIKLLMI FTSIIITISS ILTYFQMHGT NEYLDRTIKD TISETLDSLE DKINLSIESK 
VDVSKSVIDI YENLLEGESP LSKFKDVDVN HLSNVFQLFG YADERTGEII TNDPNFKVPT 
GFDPRTRSWY LNAKKLNTFS LSEPYVDLIT EKLMVTTSAP IYNKNDLTGV IFFDIPLDDV 
QELIKSYNPF DAGTIFIVDN SGKIIFGNKN DISGKNLFGD FDSFPLSVSE SKTKDKNGVN 
YDVFIKMSDF GDWNLVSIID HDKARSDIIT LRNNSIFTAV ILASVFFAIL LFTMRLMLKP 
LHQLTDAMVN ISSGSADLTV RIPNSTDQEF SKIINSFNIF VGNLQSIVSE VKMNSEKINC 
ITTETQELVE VCNNSVADQY RELDMLASSM NEMVATSNQI AQITSEASEI TSKINGQVNE 
GVGAVSSVTE SVGNLVEKLD KTKSVIQDLN RQTQNIDVIL KAINDIADQT NLLALNAAIE 
AARAGENGRG FAVVADEVRS LAIKTQESTK NIGSIIHILQ ENSLLSVHVM DESFNIASET 
MTISADSKQC LDNISQSVIQ IVDITNQVAT AAYEQSHVSE EINSNSISIK DKADTLSSLG 
NKISQQAYSQ KALIGHQDDL ISKFII