Gene VC0395_A0365 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0365 
SymbolacfB 
ID5137124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp392234 
End bp394114 
Gene Length1881 bp 
Protein Length626 aa 
Translation table11 
GC content34% 
IMG OID640531823 
Productaccessory colonization factor AcfB 
Protein accessionYP_001216321 
Protein GI147673778 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTTT CTATCAAGTT ACTAATGATT TTTACATCAA TTATAATTAC TATTTCATCT 
ATCCTTACTT ACTTTCAGAT GCATGGAACC AATGAATATC TTGATCGTAC GATAAAAGAT
ACTATTTCTG AAACGCTAGA CTCTTTGGAA GATAAAATAA ATCTTTCTAT TGAGTCCAAG
GTCGATGTGT CAAAATCTGT TATCGACATT TATGAAAATT TACTGGAGGG GGAATCCCCT
CTCAGTAAAT TTAAGGATGT TGATGTCAAT CATCTTTCAA ATGTTTTTCA ATTGTTCGGA
TATGCTGATG AAAGAACAGG AGAGATCATT ACTAATGACC CAAACTTTAA AGTGCCTACA
GGATTCGATC CAAGGACTCG ATCGTGGTAT TTAAATGCAA AAAAATTGAA TACCTTTAGT
TTGTCTGAGC CGTATGTCGA TCTCATTACA GAGAAGTTAA TGGTGACAAC AAGTGCACCA
ATATATAATA AAAACGATTT AACAGGAGTT ATATTTTTTG ATATACCACT AGATGACGTT
CAGGAATTAA TTAAAAGCTA CAATCCATTT GATGCCGGCA CGATTTTTAT CGTTGATAAC
AGTGGGAAAA TAATTTTCGG TAATAAAAAT GATATATCGG GTAAAAATTT ATTTGGAGAC
TTTGATAGCT TCCCTCTATC GGTAAGTGAG TCAAAAACGA AAGATAAAAA TGGGGTAAAT
TACGATGTAT TCATCAAAAT GTCAGACTTT GGCGATTGGA ATCTTGTTTC TATTATCGAC
CATGATAAAG CACGCTCTGA TATTATCACG TTGAGAAACA ATAGTATATT TACTGCCGTC
ATTTTAGCAA GTGTTTTCTT TGCTATCTTG TTGTTTACTA TGCGGTTAAT GCTGAAGCCA
TTGCATCAAT TAACCGATGC AATGGTAAAT ATTTCATCGG GCAGTGCTGA TCTTACGGTT
CGTATCCCGA ATAGTACGGA TCAAGAGTTT TCAAAAATAA TAAATTCCTT TAACATTTTT
GTTGGTAATC TGCAATCTAT TGTGTCGGAG GTTAAAATGA ACTCAGAAAA AATAAATTGC
ATAACTACTG AAACACAAGA GCTAGTCGAA GTTTGCAATA ATAGCGTAGC TGATCAGTAT
CGTGAACTTG ATATGCTAGC TAGCTCAATG AATGAGATGG TGGCAACATC TAATCAGATT
GCACAAATTA CATCCGAAGC ATCAGAGATC ACATCTAAGA TTAACGGTCA AGTGAATGAA
GGAGTCGGTG CTGTTTCTTC TGTTACCGAA AGTGTAGGTA ATTTAGTTGA GAAGTTGGAT
AAGACGAAAT CTGTTATCCA AGATCTTAAT CGCCAAACTC AAAATATAGA TGTTATTTTG
AAGGCTATTA ATGATATTGC TGACCAAACA AACCTTCTTG CTCTTAATGC TGCAATTGAG
GCTGCACGAG CTGGGGAAAA TGGACGAGGT TTTGCTGTGG TTGCTGATGA GGTACGCAGC
CTAGCAATAA AGACACAAGA GTCTACTAAA AATATAGGAA GTATTATCCA TATATTACAA
GAAAACTCTT TGCTATCCGT TCATGTTATG GATGAAAGTT TTAATATTGC CTCTGAAACT
ATGACTATAT CAGCTGATTC AAAACAATGT TTAGACAATA TTAGTCAATC AGTAATACAA
ATTGTTGATA TCACAAATCA AGTAGCTACA GCTGCTTACG AACAAAGTCA CGTATCAGAG
GAAATAAACA GCAACTCTAT TTCTATAAAA GATAAAGCAG ATACCTTATC AAGTTTGGGT
AATAAGATTT CTCAACAGGC TTATTCTCAA AAAGCACTGA TTGGTCATCA AGATGATTTA
ATCAGTAAGT TTATCATTTA A
 
Protein sequence
MKFSIKLLMI FTSIIITISS ILTYFQMHGT NEYLDRTIKD TISETLDSLE DKINLSIESK 
VDVSKSVIDI YENLLEGESP LSKFKDVDVN HLSNVFQLFG YADERTGEII TNDPNFKVPT
GFDPRTRSWY LNAKKLNTFS LSEPYVDLIT EKLMVTTSAP IYNKNDLTGV IFFDIPLDDV
QELIKSYNPF DAGTIFIVDN SGKIIFGNKN DISGKNLFGD FDSFPLSVSE SKTKDKNGVN
YDVFIKMSDF GDWNLVSIID HDKARSDIIT LRNNSIFTAV ILASVFFAIL LFTMRLMLKP
LHQLTDAMVN ISSGSADLTV RIPNSTDQEF SKIINSFNIF VGNLQSIVSE VKMNSEKINC
ITTETQELVE VCNNSVADQY RELDMLASSM NEMVATSNQI AQITSEASEI TSKINGQVNE
GVGAVSSVTE SVGNLVEKLD KTKSVIQDLN RQTQNIDVIL KAINDIADQT NLLALNAAIE
AARAGENGRG FAVVADEVRS LAIKTQESTK NIGSIIHILQ ENSLLSVHVM DESFNIASET
MTISADSKQC LDNISQSVIQ IVDITNQVAT AAYEQSHVSE EINSNSISIK DKADTLSSLG
NKISQQAYSQ KALIGHQDDL ISKFII