Gene Pmen_2154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2154 
Symbol 
ID5109494 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2376854 
End bp2378737 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content65% 
IMG OID640503398 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001187646 
Protein GI146307181 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0789614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value0.507372 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCG CTCACAAGGT CGGCATCGCA GCCGCTACCG TTCTCTTTCT CACCACCAGC 
CTGCTGTCGC TGCTGCAGGT CAGCCAGGTG CGCGACACCC TGCGCGGCCA GGTGGAAGCC
AGCATTTCCG AATCGAGCAA CGCGCTGGCC AGGCAGATCG AGAACTGGCT CAACGCCAAG
CTGCGCCTGA TCGATCTGAT GGCGCAGACC ATCGACAGCA ACTACAGCCC GCAGGAGGTC
CAGCGGGTGT TCGATGCGCC GCTGCTGAAA AACGAATTCA TCCTGGTATT CGGAGCGTTG
GAAGCGGACG GCAAGCCGAT CAAGAACAGC GACGACTGGA AGCCCAGCCC TGACTGGGAC
GGCCGCAAGC GCCCCTGGTA CGCCACCGGC AAGGGCGGCA GCCAGGCCAT GCTGACGGAG
CCCTACGTGG ACTCCACCAC CAATGAGATT CTCATCTCCG CCGTGGCCCG AATCAGCGAT
GCGGGCCAGT TTCTCGGCGC CTTCGGTGGC GATATCCGCC TGCAGTCGGT GGCCGATGCG
GTCAACACCC TGGATTTCAA CGGCGCCGGC TATGCCTTCC TGCTGAGCCG CTCGGGCAAC
ATCATTTCCC ACCCCAACGC CGACTACAAC GGCAAGGCCT ACAGCGAACT GTTCGACGGC
CAGAGCCCGG CATTGGGCAA GGAGCTGCGC GAAGTGCAAG CCGGCGGCAA GAGCCTGCTG
CTGTCCTTCA CCCCGCTGCC CAACCTGCGC GGCATGGACT GGTACATCGG CGTGGTGCTG
GATGAAAGCG TGGTCATGGC CGAAGCCAAT CGCCTGACCT GGCTGGCAGT GATCGGTACC
GTGATCGGCG TCGCCATCAG CCTGGTGGTG CTCGGCCTGC TGATGAACAG CCTGCTCAAA
CCGCTGGGCC TGCTCAGCAC CTCGCTGCGC GAGATCAACA GCGGCGAAGG CGACCTGACG
CGCCGCCTGG CCATCACCAG CAACGACGAG ATCGGCGAGC TGTCGCAGGA GTTCAACCGT
TTCCTGCAGA CCTTGCAGAC CCTGATCGGC GACGTGATGG GCAGCTCGCA GCAGGTGCGC
GAGAGCACCG CCCTCACCTC CCACGAGTCC GAGCAGGCCG CTCGCCGGCT GCAGGAACAG
CTGCAGGAGC TGGACCAACT GGCCACTGCG ATGCAGGAGA TGGCGTCCAC CGCCGAAGAG
GTGGCGCGCA ACGCCCAGGC CGCAGCCCAG GCGGCCGTGG CCGCCAACGA AGAAACCGAA
AACGGCGTTC GCGTGGTGTC GCAGTCCAGC TCGGCCATTC GCCATCTGGC CGACGAGATG
GACGAAACCA GCCATGCGAT CAACGAGCTG GCCAAGCTCA GCCACAACAT CGAGTCGATC
CTGCAGGTGA TCACCAGCAT CGCCGAACAG ACCAATCTGC TGGCGCTGAA CGCGGCCATC
GAAGCGGCGC GCGCAGGCGA GTCCGGCCGC GGCTTCGCCG TGGTCGCCGA CGAGGTGCGC
TCGCTGGCCT CGCGCACGCA GCAGGCCACC CAGGAAATCC GCCAGATGAT CGACCAGCTG
CAAGGCGGCG TGCGTCAGGC CGAGAGCCGC ATGCAGCAGA GCCGCGATAC CGCCAGCAAG
ACCGCCGAGG AAGCCGGCGC AGCCAACGAC ATGCTCGGGC GCATTCGCGA GGCGATTACC
CGCATCAACG ACATGAACCT GCAGATCGCC ACCGCCGCCG AGGAGCAGAG CGCCACCACC
GAGGAAATCA ACCGCAACAC CACCAACATT CGCGACATCA GCCATGAACT GGCCGGCGGC
GCCGAACAGC AGGTGCGCCA ATGCGCCTCG ATGGTGGAAC AGGTGGGCCA GCAGGACCGT
CTGCTCGGCC GCTTCAAGGT CTGA
 
Protein sequence
MKIAHKVGIA AATVLFLTTS LLSLLQVSQV RDTLRGQVEA SISESSNALA RQIENWLNAK 
LRLIDLMAQT IDSNYSPQEV QRVFDAPLLK NEFILVFGAL EADGKPIKNS DDWKPSPDWD
GRKRPWYATG KGGSQAMLTE PYVDSTTNEI LISAVARISD AGQFLGAFGG DIRLQSVADA
VNTLDFNGAG YAFLLSRSGN IISHPNADYN GKAYSELFDG QSPALGKELR EVQAGGKSLL
LSFTPLPNLR GMDWYIGVVL DESVVMAEAN RLTWLAVIGT VIGVAISLVV LGLLMNSLLK
PLGLLSTSLR EINSGEGDLT RRLAITSNDE IGELSQEFNR FLQTLQTLIG DVMGSSQQVR
ESTALTSHES EQAARRLQEQ LQELDQLATA MQEMASTAEE VARNAQAAAQ AAVAANEETE
NGVRVVSQSS SAIRHLADEM DETSHAINEL AKLSHNIESI LQVITSIAEQ TNLLALNAAI
EAARAGESGR GFAVVADEVR SLASRTQQAT QEIRQMIDQL QGGVRQAESR MQQSRDTASK
TAEEAGAAND MLGRIREAIT RINDMNLQIA TAAEEQSATT EEINRNTTNI RDISHELAGG
AEQQVRQCAS MVEQVGQQDR LLGRFKV