Gene Ssed_3477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3477 
Symbol 
ID5613363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4233476 
End bp4235344 
Gene Length1869 bp 
Protein Length622 aa 
Translation table11 
GC content47% 
IMG OID640934425 
Productputative methyl-accepting chemotaxis protein 
Protein accessionYP_001475209 
Protein GI157376609 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000522984 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGTTTG TACATAAGAT TGTGATGGCT GTGAGTTTAA TTTTGATGTT GTCCTTGGGT 
TGTCTGTCAG GATATCAATA TATTCAAATA AAACAGCAGA TTAATGATCA GGTGAACAGT
AGTGTTTCTG AGCTTGCCAG TTCGATGAAC AGTAACATTC AAGCTGTCAT GGCTGAAAAG
GCGGATCTAA CAGCCTATGC GGTTTCACTG TTACAGGAAG ATCTATCAGA TGAGCATTTC
GTTGAAATAT TAGGGCAAGC GGTAATAAAG AAACACTTTC TTTTGGCGGG TATGGGCCTG
GAGAGTGGTC ACTTTGTAGG AAACGATCCT AACTGGGATC CCGGCGCGAG TTATGACCCT
CGTCAACGGA TGTGGTACAA GGAAGCTAAA AGTAATAATA AACAATTGTT TACAGCACCT
TATGCCGATG CTTCCAGCGG TGAGATAATG ATATCTACCG CAGCCCCTTT ATACGAAAAT
GGTCAATTTA AAGGTGCACT TTTTACCGAT GTCAGCCTTA AGAGTCTGGC AGAGATCAGT
AATGAGGCGC ACCTATTTGG TGCCGGTTAT GCGTTTATAG TGGGTAACGA TGGTGAGTTT
ATCGCGCATC CTGAGGCTGC ACAGAATGGA CGTGCGATGG ACCAATTTTT TGGTGAGCGC
TTGGATACTA GCAAGGAGTT TGGTGAAGTA GAGATTGATG GACAGATGCA TGCAGTGATC
TTCAGTCCTC TATCGGGTCT GGGCTGGACT CTGGGCATTG TTTTGGATGA AAGCATTATT
TATGCTGCCG CCGATGAACT TAGAAATGCA GCGATTCTGT ATTCAGTGTT GTCACTTATC
ATAGCGATAA TAGTCATGAG CGGAATTATC AGTCGTTTGA TGAGACCTCT GGAAGTGTTA
AATGAAGCTA TGGCCGATGT CGCAACGGGA GAGGGAGATC TTACCCGTCG TTTGAGTACA
GATTCTGATG TCGAATTTGC CACCCTGGCC GGCAACTTCA ACAATTTTGC TATCAAGCTG
CAGGAACTAA TCCAGCAAGT TAAGTTGATC GGAGGGGAGG TCAGCCTAGG TACCGAAACC
ACGGCGAGAG GGGCCAGTGA AGTGACGCAC TCGATGAGTT TGCAAACCCA AGAGGTTGAA
CAGTTAGCCA CTGCGATGCA TGAGATGGCG ACAACGGCTT CAGATGTGGC CAATAATGCT
CAAGGTGCGG CTTATGCGGT TCAACAAGCC GATAATGCCG TGAGCGATGG TGCCTCGGCC
GTGCTGCAGA CAACTGAGTC TATCGAGCAT CTCTCTCAGC AGATTGAAGA GGCTGTGGTG
GTCGTTAAAG AGCTGGAAAC GGATACAGTG AGTATCGAGT CAATACTCGG CGTCATTAAT
GAGATCGCGG GTCAAACTAA TTTGCTGGCA CTTAACGCGG CAATCGAAGC CGCAAGGGCC
GGTGAGTCGG GAAGAGGCTT TGCCGTCGTT GCCGATGAGG TTCGTAGCCT AGCCGCACGT
ACTACGGAGT CGACTTCAGA AATTAAAGAG AAAATTGAGA AGTTGCAGTC TGGTGTGGCC
GCCGTTGTAA ATGTAATGGA TGAAAGCCGT ACAACAACGG TCACAACCGT TGAAAAAGCC
AAAGCTGCGA ATGAAACCCT CAGCGAGATC CGTAAGAGTA TCGAAGAGAT AACCGATATG
AACTTGCAGA TTGCCAGTGC CGCAGAGGAG CAGAGCCAAG TAGCCGAGGA GATGAATAAG
AACACCTCCA ATATCAGAGA TCTGTCGATG CAGGTTTCAG ATAGTACCGA GCAGACAAAT
CAGGCGATGA GTGCGCAGTT GGATCATGTT AAGCAACAAG AGGAACTATT GAATCAGTTT
ATCGTGTAA
 
Protein sequence
MKFVHKIVMA VSLILMLSLG CLSGYQYIQI KQQINDQVNS SVSELASSMN SNIQAVMAEK 
ADLTAYAVSL LQEDLSDEHF VEILGQAVIK KHFLLAGMGL ESGHFVGNDP NWDPGASYDP
RQRMWYKEAK SNNKQLFTAP YADASSGEIM ISTAAPLYEN GQFKGALFTD VSLKSLAEIS
NEAHLFGAGY AFIVGNDGEF IAHPEAAQNG RAMDQFFGER LDTSKEFGEV EIDGQMHAVI
FSPLSGLGWT LGIVLDESII YAAADELRNA AILYSVLSLI IAIIVMSGII SRLMRPLEVL
NEAMADVATG EGDLTRRLST DSDVEFATLA GNFNNFAIKL QELIQQVKLI GGEVSLGTET
TARGASEVTH SMSLQTQEVE QLATAMHEMA TTASDVANNA QGAAYAVQQA DNAVSDGASA
VLQTTESIEH LSQQIEEAVV VVKELETDTV SIESILGVIN EIAGQTNLLA LNAAIEAARA
GESGRGFAVV ADEVRSLAAR TTESTSEIKE KIEKLQSGVA AVVNVMDESR TTTVTTVEKA
KAANETLSEI RKSIEEITDM NLQIASAAEE QSQVAEEMNK NTSNIRDLSM QVSDSTEQTN
QAMSAQLDHV KQQEELLNQF IV