| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3477 |
|---|
| Symbol | |
|---|
| ID | 5613363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4233476 |
|---|
| End bp | 4235344 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640934425 |
|---|
| Product | putative methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_001475209 |
|---|
| Protein GI | 157376609 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000522984 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTG TACATAAGAT TGTGATGGCT GTGAGTTTAA TTTTGATGTT GTCCTTGGGT
TGTCTGTCAG GATATCAATA TATTCAAATA AAACAGCAGA TTAATGATCA GGTGAACAGT
AGTGTTTCTG AGCTTGCCAG TTCGATGAAC AGTAACATTC AAGCTGTCAT GGCTGAAAAG
GCGGATCTAA CAGCCTATGC GGTTTCACTG TTACAGGAAG ATCTATCAGA TGAGCATTTC
GTTGAAATAT TAGGGCAAGC GGTAATAAAG AAACACTTTC TTTTGGCGGG TATGGGCCTG
GAGAGTGGTC ACTTTGTAGG AAACGATCCT AACTGGGATC CCGGCGCGAG TTATGACCCT
CGTCAACGGA TGTGGTACAA GGAAGCTAAA AGTAATAATA AACAATTGTT TACAGCACCT
TATGCCGATG CTTCCAGCGG TGAGATAATG ATATCTACCG CAGCCCCTTT ATACGAAAAT
GGTCAATTTA AAGGTGCACT TTTTACCGAT GTCAGCCTTA AGAGTCTGGC AGAGATCAGT
AATGAGGCGC ACCTATTTGG TGCCGGTTAT GCGTTTATAG TGGGTAACGA TGGTGAGTTT
ATCGCGCATC CTGAGGCTGC ACAGAATGGA CGTGCGATGG ACCAATTTTT TGGTGAGCGC
TTGGATACTA GCAAGGAGTT TGGTGAAGTA GAGATTGATG GACAGATGCA TGCAGTGATC
TTCAGTCCTC TATCGGGTCT GGGCTGGACT CTGGGCATTG TTTTGGATGA AAGCATTATT
TATGCTGCCG CCGATGAACT TAGAAATGCA GCGATTCTGT ATTCAGTGTT GTCACTTATC
ATAGCGATAA TAGTCATGAG CGGAATTATC AGTCGTTTGA TGAGACCTCT GGAAGTGTTA
AATGAAGCTA TGGCCGATGT CGCAACGGGA GAGGGAGATC TTACCCGTCG TTTGAGTACA
GATTCTGATG TCGAATTTGC CACCCTGGCC GGCAACTTCA ACAATTTTGC TATCAAGCTG
CAGGAACTAA TCCAGCAAGT TAAGTTGATC GGAGGGGAGG TCAGCCTAGG TACCGAAACC
ACGGCGAGAG GGGCCAGTGA AGTGACGCAC TCGATGAGTT TGCAAACCCA AGAGGTTGAA
CAGTTAGCCA CTGCGATGCA TGAGATGGCG ACAACGGCTT CAGATGTGGC CAATAATGCT
CAAGGTGCGG CTTATGCGGT TCAACAAGCC GATAATGCCG TGAGCGATGG TGCCTCGGCC
GTGCTGCAGA CAACTGAGTC TATCGAGCAT CTCTCTCAGC AGATTGAAGA GGCTGTGGTG
GTCGTTAAAG AGCTGGAAAC GGATACAGTG AGTATCGAGT CAATACTCGG CGTCATTAAT
GAGATCGCGG GTCAAACTAA TTTGCTGGCA CTTAACGCGG CAATCGAAGC CGCAAGGGCC
GGTGAGTCGG GAAGAGGCTT TGCCGTCGTT GCCGATGAGG TTCGTAGCCT AGCCGCACGT
ACTACGGAGT CGACTTCAGA AATTAAAGAG AAAATTGAGA AGTTGCAGTC TGGTGTGGCC
GCCGTTGTAA ATGTAATGGA TGAAAGCCGT ACAACAACGG TCACAACCGT TGAAAAAGCC
AAAGCTGCGA ATGAAACCCT CAGCGAGATC CGTAAGAGTA TCGAAGAGAT AACCGATATG
AACTTGCAGA TTGCCAGTGC CGCAGAGGAG CAGAGCCAAG TAGCCGAGGA GATGAATAAG
AACACCTCCA ATATCAGAGA TCTGTCGATG CAGGTTTCAG ATAGTACCGA GCAGACAAAT
CAGGCGATGA GTGCGCAGTT GGATCATGTT AAGCAACAAG AGGAACTATT GAATCAGTTT
ATCGTGTAA
|
|---|
| Protein sequence | MKFVHKIVMA VSLILMLSLG CLSGYQYIQI KQQINDQVNS SVSELASSMN SNIQAVMAEK
ADLTAYAVSL LQEDLSDEHF VEILGQAVIK KHFLLAGMGL ESGHFVGNDP NWDPGASYDP
RQRMWYKEAK SNNKQLFTAP YADASSGEIM ISTAAPLYEN GQFKGALFTD VSLKSLAEIS
NEAHLFGAGY AFIVGNDGEF IAHPEAAQNG RAMDQFFGER LDTSKEFGEV EIDGQMHAVI
FSPLSGLGWT LGIVLDESII YAAADELRNA AILYSVLSLI IAIIVMSGII SRLMRPLEVL
NEAMADVATG EGDLTRRLST DSDVEFATLA GNFNNFAIKL QELIQQVKLI GGEVSLGTET
TARGASEVTH SMSLQTQEVE QLATAMHEMA TTASDVANNA QGAAYAVQQA DNAVSDGASA
VLQTTESIEH LSQQIEEAVV VVKELETDTV SIESILGVIN EIAGQTNLLA LNAAIEAARA
GESGRGFAVV ADEVRSLAAR TTESTSEIKE KIEKLQSGVA AVVNVMDESR TTTVTTVEKA
KAANETLSEI RKSIEEITDM NLQIASAAEE QSQVAEEMNK NTSNIRDLSM QVSDSTEQTN
QAMSAQLDHV KQQEELLNQF IV
|
|---|
| |