Gene Shewmr7_3825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3825 
Symbol 
ID4256812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4545429 
End bp4547300 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content52% 
IMG OID638124514 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_739859 
Protein GI114049309 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTCAT ACTCGCTTAA ACAAAAGATC CTGATTTCGG TCGTGATCGC GCTGTCCCTC 
GTGATCGGCT TGCTGTCTTG GCAAAGCTAT TCCAGTCAAA AGTCATTGTT GCTGCAAAAT
AGCCTAGAGC AGGTGCAACG CTTGGGTGAG CAACAGGCCG AGCGCATTCA AGAGTGGCTC
GCAGGACGCC AAGATATCGT AGGCGCATTG GCCTCTAAAG TTGAAGGTAA TAGTTTAAGT
GCATTACAGC AGGCGCAGGC CTCAGGGCGA TTCCAGCTGA CCTATTTTGG TACCGAGACT
GGGCAGATGT TGGATTCAGA TCCAAGTATC GACCGCACGG GTTATGATCC GAGAACGCGC
CCTTGGTATA AACAGGCGAT GAATGAGCGC GGTCTTATCC TGACAAAACC CTATGTTGAC
GTGGCCTATA ACGTGTTAGT GGTCACTATG GCGCAGCCGA CTTCTCAAGG TGTGGTTGGG
GGTGATCTCT CGATTGCGAG CCTAGTTGAG AGCGTGAATC GCATGACGCT CCCCGCCAAT
GGCTATGCAA TCATGATGCA CAAAGACGGC ACAGTGATTG CTTACAAAGA TGCTTCAAAG
GCGATGAAGC CTGTCGGCCA AATCGACAAC GATCTGAATC ATGATTTACC GCAGCAGAGC
CGCCAAGCAG GAGCCTTGCT GCCCATGTAT TTTGAGAATG AGGGCCGTGA CAAGTTAGTC
TGGGGCGTCG ATATTCCCAA TACCGACTGG GAATTGGTGA TAGTACTGGA TAAGGAGACC
TTAGAGGCGC CGTTAACCGA TCTTCTGCTG ACGCAATTTG GACTTTCCGC CGTAGTGTTA
TTGCTGAGCG TGTTGGCGAT TTCCTGGTTG GTGAATCTAT TGCTAGGTCC ACTCGGACGC
GTGTCACAGG CGCTGGCACG CATTGCCGAC GGTAATGGCG ATTTAACTCA ACGCATCGAG
GTCGATACAC AGGATGAGGT GGGCGTGTTA GCCGATAGCT TTAACCGTTT TGTCGGCAGC
CAGCATCAAC TCATCAGCCA TATTCGTCAG TTAGCCAGTG AGCTGGATGC GGATGCCGAG
CGCAGTCTTA AAACCAACCA TATTGCCGTG GCAGAGTTGC AACGTCAGCA GCAGGAAGTG
GCTATGGTGG CAACGGCGGT GACCGAAATG GCAAGCGCGA CCAATGAAAT TGCCGCCAAT
GCGGAAAACA CTGCGACAGC GGCGCAGCAG TCGGCTGCGA GCAGTTTCCA AGGCAAAGAG
CTGGTCAATA AAACCCGCAG TTCGATCAAT TCCCTAGCCG ATGAAGTCGC TCAGGCAACA
GACGTGATTG AAGATTTAAG TCGCCATGCA CAGTCGATTT CTAGCATTTT AGCGACTATT
CAAGGGATTG CGGAACAGAC TAACCTATTA GCGCTCAACG CTGCGATTGA AGCCGCCCGC
GCGGGTGAGC AGGGCCGTGG TTTTGCCGTG GTCGCCGATG AGGTACGGGT ATTGTCGCGT
CGGACTCAAG ATTCGACCCA AGAGGTACAT GCGACCATTG AAACCCTGCA ACGCACCACT
GCAAAAGCCG TGAGTTTGAT GGAAAGCAGT CAAATGCTCG CAGGCAACAG CGTGGAAGAT
GCGAATGCCG CCGCAAAGGC GTTGGAAGAA ATCACCCAAG CCGTGAATGT GATTTCGGAT
ATGGCAGGCC AAATTGCCAC TGCCGCCGAA GAGCAAACCC AAGTTACGGG GGAGATCACC
CAAAATACAG TGGCGATCAA GGACGTGACC GACGAAATCA CCGAGGCCGC GAAATCGGAT
CTGACTCAAG CCCAAGGATT AAAGGCGCGC GCGAATGATC TTAATGCACA GGTAGCGACC
TTTATTCTCT AA
 
Protein sequence
MNSYSLKQKI LISVVIALSL VIGLLSWQSY SSQKSLLLQN SLEQVQRLGE QQAERIQEWL 
AGRQDIVGAL ASKVEGNSLS ALQQAQASGR FQLTYFGTET GQMLDSDPSI DRTGYDPRTR
PWYKQAMNER GLILTKPYVD VAYNVLVVTM AQPTSQGVVG GDLSIASLVE SVNRMTLPAN
GYAIMMHKDG TVIAYKDASK AMKPVGQIDN DLNHDLPQQS RQAGALLPMY FENEGRDKLV
WGVDIPNTDW ELVIVLDKET LEAPLTDLLL TQFGLSAVVL LLSVLAISWL VNLLLGPLGR
VSQALARIAD GNGDLTQRIE VDTQDEVGVL ADSFNRFVGS QHQLISHIRQ LASELDADAE
RSLKTNHIAV AELQRQQQEV AMVATAVTEM ASATNEIAAN AENTATAAQQ SAASSFQGKE
LVNKTRSSIN SLADEVAQAT DVIEDLSRHA QSISSILATI QGIAEQTNLL ALNAAIEAAR
AGEQGRGFAV VADEVRVLSR RTQDSTQEVH ATIETLQRTT AKAVSLMESS QMLAGNSVED
ANAAAKALEE ITQAVNVISD MAGQIATAAE EQTQVTGEIT QNTVAIKDVT DEITEAAKSD
LTQAQGLKAR ANDLNAQVAT FIL