Gene PputGB1_4443 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_4443 
Symbol 
ID5872251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp4975848 
End bp4977722 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content61% 
IMG OID641549578 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001670667 
Protein GI167035436 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0000033578 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACAAAA GCCTTCGTTT CAGCCACAAG ATTCTTTTGG CAGCATCACT GATCGTGATA 
CTTGCCTTCA GCCTTTTCAC CCTCTACAAC GATTACCTCC AGCGTAATGC GATCCGCGAG
GACCTGGAAA ACTATCTGGC TGAAATGGGC ACCTCCACTT CGACCAACAT CCGCAACCTG
TTCGAAGGCC GCATCAAACT GGTGGAGAAC CTGGCACAGA ACATTGCCCA GGACCCGACC
AACGCCGAAA CCCTGATGGG CCAGAATGCG CTGATATCCA GCTTCCTTAC CGTGTACCTG
GGCAAGGTCG ACGGCGGTTT CAGCGTGCGC CCCGACGCGA AGATGCCCGA CGGCTATGAC
CCACGTACCC GTCCCTGGTA CAAGGACGGC ATGAGCGCCA GCGGCGCAAC CCTGACCGAA
CCGTACATCG ACATGACCAC CAACAAGATG GTCATCGGTA TCCTCAGCAA GGTCTCCAGC
AGCGTTGGCG TGGTTGGTGG CGACCTGGCC CTGGACGGCC TGGTGCAGAT CATCAACTCG
CTGAACTTCG GCGGCATGGG CTATGCCTTC CTGGTCAACG ACCAGGGCAA GATCCTGGTG
CACCCGGACA AAGACCTGGT GATGAAGTCA CTGTCAGACC TGTTCCCGCA GCACACGCCA
AAACTGACAG GCGAGCTGAC CGAAGTGCAG AGCGATGGCC AGGCCCGCCT GCTGACCTTC
ACCCCGATCA CCGGCTTGCC GTCGGCCAAC TGGTACATCG GTTTGTCGGT GGACAAGAAC
AAGGCCTTCT CGATGCTCAG CACCTTCCGC ACCTCGGCGG TGATCGCCAC GGTAGTGGCG
GTGGTGATCA TCATCGGCCT GCTCGGTTTG CTGATTCGCG TGTTGATGCA GCCGCTGCAC
ACCATGACGC GCGCCATGGA AGACATTGCC GAAGGTGAAG GCGACCTGAC CAAGCGCCTG
CGCATCCACA ACCACGACGA ATTCGGCATC CTCGGCAACG CCTTCAACCG GTTCGTCGAG
CGTATTCACA GCAGCATCCG CGAAGTGTCT TCTGCCACCG AGCAGGTCAA CGAAGTGGCC
CTGCGGGTCA TCAGTGCTTC GAATTCATCG ATGACCAACT CCGACGAGCA GTCCAACCGC
ACCAACAGTG TCGCCGCCGC CATCAACGAG TTGGGCGCCG CCGCTCAGGA AATTGCCGGC
AATGCTGCTC AAGCCTCGCA GCACGCCAGT TCCGCGCGCC TGCTGGCCGA AGAGGGCCAG
CAAGTGGTCG AGCGCAACAT TGCTGCGATG AACCGCCTGT CCGACCTGAT CGTCACGTCC
AGCGAGCACA TCGAAACGCT GAACAGCAAG ACCGTGAATA TCGGCCAGAT CCTCGAAGTG
ATCACCAGCA TCTCCCAGCA GACCAACCTG CTGGCGCTGA ACGCCGCCAT CGAAGCAGCC
CGCGCCGGTG AAGCCGGGCG TGGTTTTGCC GTGGTTGCCG ACGAAGTGCG CAACCTGGCG
CACCGCACCC AGGAATCGGC GCAGCAGGTG CAGACCATGA TCGAAGAGCT GCAGGTCGGT
GCCCGCGAGT CGGTCGACAC CATGGACCAG AGCCAGCGCC ACAGCCAGGA CAGCATGCAG
ATCGCCAACC AGGCCGGTGA GCGGCTGGAC AGCGTGACCG TGCGCATTGG CGAGATCGAT
GGCATGAACC AATCGGTGGC CACTGCCACC GAAGAACAGA CCGCCGTGGT CGAGGCGATC
AACATGGACA TCAACGAGAT CAACATGCTC AACCAGGAAG GCGTGGAAAA CCTGCAGGCG
ACCCTGCGCG CGTGCTCCGA CCTTGAGCAG CAGGCTGGCC GCCTGAAGCA CCTGGTGGGC
AGCTTCCGCA TCTAA
 
Protein sequence
MNKSLRFSHK ILLAASLIVI LAFSLFTLYN DYLQRNAIRE DLENYLAEMG TSTSTNIRNL 
FEGRIKLVEN LAQNIAQDPT NAETLMGQNA LISSFLTVYL GKVDGGFSVR PDAKMPDGYD
PRTRPWYKDG MSASGATLTE PYIDMTTNKM VIGILSKVSS SVGVVGGDLA LDGLVQIINS
LNFGGMGYAF LVNDQGKILV HPDKDLVMKS LSDLFPQHTP KLTGELTEVQ SDGQARLLTF
TPITGLPSAN WYIGLSVDKN KAFSMLSTFR TSAVIATVVA VVIIIGLLGL LIRVLMQPLH
TMTRAMEDIA EGEGDLTKRL RIHNHDEFGI LGNAFNRFVE RIHSSIREVS SATEQVNEVA
LRVISASNSS MTNSDEQSNR TNSVAAAINE LGAAAQEIAG NAAQASQHAS SARLLAEEGQ
QVVERNIAAM NRLSDLIVTS SEHIETLNSK TVNIGQILEV ITSISQQTNL LALNAAIEAA
RAGEAGRGFA VVADEVRNLA HRTQESAQQV QTMIEELQVG ARESVDTMDQ SQRHSQDSMQ
IANQAGERLD SVTVRIGEID GMNQSVATAT EEQTAVVEAI NMDINEINML NQEGVENLQA
TLRACSDLEQ QAGRLKHLVG SFRI