Gene Swoo_0252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0252 
Symbol 
ID6114475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp306764 
End bp308635 
Gene Length1872 bp 
Protein Length623 aa 
Translation table11 
GC content47% 
IMG OID641631733 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001758648 
Protein GI170724622 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.866394 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTC ACTCGCTTAA GAAAAAAATC TTGTTTTCTG TCGTTATCGC ACTCTCGCTG 
GTGATCGTTT TGCTCTCTTG GCAAAGCTAT TTGAGTCAGA AGGAGCAACT ACAGCAAAGT
AGTCTAGAGC AGGTTCAGAG GCTGGGGAGT CAACAAGCCC ATAATATTCA ACAGTGGTTT
GCTGTTCGTG AAAATATAAT CAAAGCCTTG GGCTCACAAT CTCTGTATAA CCCGCTTAAT
CCTTTAAAGC AGGCACAGGT GTCGGGAGAT TTTGAGCTGA CCTATTTTGG CTCAAACGAT
GGCGTGATGT ATGACTCAGA TCCTTCGATT AATCGTGATG GTTATGATCC TCGCAGCCGT
GGTTGGTACC AAGAAGCGAT GAATCAAGGT GGCTTAATTG TGACTAAGCC TTACGTTGAT
GTTGCTTATA ATATTCTTGT TGTGACACTG GCACAGTCAA CCACTGGTGG TGTTGTAGGT
GGGGATTTGC CGATCGCGGG TATTGTCGAT GATATTGAGC GCATGGCGTT GCCAGCAGAT
GGCTACGCTG TGCTAATGCA CAAAGATGGT ACCGTTATCG CTTATAAAAA TGCGGGTAAA
GCGATGCGCC CTGCCTATGA AATTGATAAT GACCTATCAC ATGGATTGCC AGCGATGAGT
CAATCAAGCA ATGCTTTTAC GCCAGCTTAC TTTGAAAGTG AAAGTCGTGA AAAGCTGCTA
TGGGGCGTGA GTATTCCTGA TACCGATTGG GAACTGGTAT TGGTGTTGGA TAGGCAGACG
CTGGAAGCGC CGTTATCTTC ACTCTTGATT AAGCAGTTAG GCCTATCTCT TATCATCTTA
ATTGCCAGTG TATTGGCTAT CTCTGCATTG GTGAATATCT TGCTGGGGCC ACTTTCCAAA
GTATCACAGG CGCTAGCAAA AATTGCCGAT GGTAATGGCG ATCTGACCCA GAGAATTGAG
GTCGAAAGTG ATGATGAGGT GGGTGTACTT GCTGAGAGTT TTAACCGTTT TGTTGGTAGT
CAACATGAGT TAATTACTCA TATTCGTCAG TTAGCAACTG AGTTAGATCT CGATGCTGAG
CGAAGCCTAA ACACGAACCA AGCTGCTGTG CAGGAGTTGC AGAGACAGCA GCAAGAGGTA
GCCATGGTTG CTACCGCGGT GACAGAGATG TCTTGTGCCA CGCAGGAGAT CGCATCAAAT
GCCGAAAATA CAGCCACGGC TGCGCAACAA TCATCATCGA GTAGTGAGCA GGGAAAGAAT
CAGGTTGATC AGACACGCCA CTCGATTAAC TCTCTGGCCA GCGAAGTGAC GCTAGCAACG
GAAGTGATTG GTGATCTTAG TCAACATGCC CAGTCAATCT CAGGGATCTT ATCGACGATT
CAGGGGATAG CAGAGCAGAC TAACCTGTTA GCACTTAATG CCGCGATTGA AGCCGCTAGA
GCAGGTGAAC AGGGGCGCGG ATTTGCTGTG GTAGCCGATG AGGTGCGTGT ATTGTCTCGT
CGAACTCAAG ATTCAACCCA AGAGATCCAC GCTACCATAG AGACTTTACA GCAGATGACG
GCACGAGCGG TGCAGCTAAT GAAAACCAGT CAGGAGTTGG CGGGAAATAG TGTGAACGAT
GCCGATGAGG CTGCGCTGGC ATTAGAGGAG ATAACTCAAG CTGTGTCACT TATCTCTGAC
ATGGCAGGAC AGATAGCGAC AGCTGCAGAG GAACAGACTC AAGTGACCGC TGAGATCACC
CAAAATACCA TAGCGATTAA AGATGTCACC GATGATATTA CTGGTTCGGC TATGGATACC
TTAGAGCATG CTCAACAGCT TAAGCAAAGA GCCAATGACT TAAATACTAA GGTCGCCACT
TTTATTCTAT AA
 
Protein sequence
MKSHSLKKKI LFSVVIALSL VIVLLSWQSY LSQKEQLQQS SLEQVQRLGS QQAHNIQQWF 
AVRENIIKAL GSQSLYNPLN PLKQAQVSGD FELTYFGSND GVMYDSDPSI NRDGYDPRSR
GWYQEAMNQG GLIVTKPYVD VAYNILVVTL AQSTTGGVVG GDLPIAGIVD DIERMALPAD
GYAVLMHKDG TVIAYKNAGK AMRPAYEIDN DLSHGLPAMS QSSNAFTPAY FESESREKLL
WGVSIPDTDW ELVLVLDRQT LEAPLSSLLI KQLGLSLIIL IASVLAISAL VNILLGPLSK
VSQALAKIAD GNGDLTQRIE VESDDEVGVL AESFNRFVGS QHELITHIRQ LATELDLDAE
RSLNTNQAAV QELQRQQQEV AMVATAVTEM SCATQEIASN AENTATAAQQ SSSSSEQGKN
QVDQTRHSIN SLASEVTLAT EVIGDLSQHA QSISGILSTI QGIAEQTNLL ALNAAIEAAR
AGEQGRGFAV VADEVRVLSR RTQDSTQEIH ATIETLQQMT ARAVQLMKTS QELAGNSVND
ADEAALALEE ITQAVSLISD MAGQIATAAE EQTQVTAEIT QNTIAIKDVT DDITGSAMDT
LEHAQQLKQR ANDLNTKVAT FIL