Gene VC0395_A0908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0908 
Symbol 
ID5136445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp925059 
End bp926960 
Gene Length1902 bp 
Protein Length633 aa 
Translation table11 
GC content49% 
IMG OID640532366 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001216854 
Protein GI147673234 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000172893 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTTGACA TAATGAAATT AACACTAAAA CACAAACTGA TTGGCGCAAG TTTATCGGCA 
GTGGTGGTGA TGGCGACGGC ATTGACTTGG TTTTCCGCCA GTCAATTGCA ACAGCAAACC
AGCAATGCGG TTTATACTCG TGCTGACGCA ATTTCTTCGA CCGCTGCTAA AGGCATCTCA
GATTGGATTT CTATCCGTAA ATCAATTAGT ACTGCGTTTA ATGCTCACAT TGAAGCACAA
GATGTTGTCC CTTATCTGCA ACAAGCGCGC AATGCGGGTG GTTTTGACGA TATTTTTTAC
GGTACGACTG ATGGCGCGAT GTACCGCTCA CATCCAGAGC GTAATCGTGC GGATTACGAT
CCACGTACGC GCCCTTGGTA TAAAGATGCA GCCAGTGCGG GTAAGCAGAT CATCACCACC
GCATACAGTG ATGCGATAAC CGGCGCACTG CTTGTGACGA TTGCAGAACC TGTTCGCCTT
AACGGTAATA TGAGTGGTGT GGTTGGCGCA GATGTCCTCA TTGATCAGCT GATTGCGGAC
GTGATCAGCA TGGACGCAGG AAAAAATGCA CAAACCATGT TGATTGATGG CCAAAACGGT
TCGTTTCTAG CACATCCAGA TAAATCCTTG CTACTGAAGC CTGTGACGAC GCTCTCTTCT
GCTTTGGACA TGCGCACTAT CGAGCGTGCT GCGAATCAAG GTGAGTTGCT TGCGCTTAAA
CTGAATGGCG TGGAGAAGTT CTTCTTTTTC ACTGCGGTAC CCGATACACC TTGGTATTTC
GCAGTACAGA TGGACAGTGA TACCGAATAC GCCTCTCATT CTGAGTTATT AACAGGCCTT
ATCACTACTG CGTTACTGAT CACTGTGATT GTGATTGTGG TTGTGATTGT CTCTTGGCTC
GTTAGCTTCT TGTTCCGTGA TTTGGGTCGT GTATCGAAAG CGCTGGAGGA AATTGCCTCT
GGTGATGCCG ATTTGACACA ACGTTTAGAA CCTCGCAGTG ATGATGAAGT CGGACAACTG
GCAAGCAACT TCAATACCTT TGTGAGCAAC ATGCACACCA TGGTACTCAA GTTAAGCCAT
GTTTCAGCCG CATTGGCGCA GCAGTCGAAA GTGACGGCGG CACAAGCGGA AGAGCGCAGT
AGCCGAATTC GCTTGCAACA AGACGAAATC AATATGGTGG CTACCGCAAT TAATGAGATG
GCTGCTGCCA CTCAAGAAAT TGCGGGTAAT GCGGATCACA CGGCGCAAAA CGCAGGTGAA
GCCGTGACGG CGTGTGTCCA TGGCGCGGGT CAAGTCACTC AAACGCAGCG TTCGATTCAA
TCTTTGGCTG AAGAAGTACA AGTCGCGACC GAAGTTATTC AAGAGCTGGA AGCACATGGT
CACCAAATCA GTACGATTCT GTCGACGATT CAGAACATCG CTGAACAGAC CAACCTACTG
GCGCTGAATG CGGCCATTGA AGCTGCCCGT GCGGGTGAGC AAGGACGTGG TTTTGCTGTC
GTGGCTGATG AAGTTCGTGT GTTGAGTCAA CGTACCCACG CGTCGACCAA AGAAATCCAG
CAGATGATTG AAACGCTGCA AGCCACCACA GGTAAAGCGG TAGGTATTAT GGACGACAGT
CGTCGCCTCG CGGACACCAG TGTTGATGAT GCGAATGAAG CTTCGGTTAG CTTGGAGCAG
ATCCATAAAA CTGTAGAACG TATCAGTGAT ATGGCGACGC AAATTGCGTC AGCGGCTGAA
GAGCAAGCTT CTGTGACTTC GGAGATCACT CGCAATACCG TAGGTATTCG TGATGTTTCA
AATGATCTCG CGCAAGAAGC TCACTCCGCT GCTGAACAAG CTGCAGAGTT GTCTGAACTG
TCTCATGAGT TAGAACAAGA GATCCGTCGT TTTAAACTGT AA
 
Protein sequence
MFDIMKLTLK HKLIGASLSA VVVMATALTW FSASQLQQQT SNAVYTRADA ISSTAAKGIS 
DWISIRKSIS TAFNAHIEAQ DVVPYLQQAR NAGGFDDIFY GTTDGAMYRS HPERNRADYD
PRTRPWYKDA ASAGKQIITT AYSDAITGAL LVTIAEPVRL NGNMSGVVGA DVLIDQLIAD
VISMDAGKNA QTMLIDGQNG SFLAHPDKSL LLKPVTTLSS ALDMRTIERA ANQGELLALK
LNGVEKFFFF TAVPDTPWYF AVQMDSDTEY ASHSELLTGL ITTALLITVI VIVVVIVSWL
VSFLFRDLGR VSKALEEIAS GDADLTQRLE PRSDDEVGQL ASNFNTFVSN MHTMVLKLSH
VSAALAQQSK VTAAQAEERS SRIRLQQDEI NMVATAINEM AAATQEIAGN ADHTAQNAGE
AVTACVHGAG QVTQTQRSIQ SLAEEVQVAT EVIQELEAHG HQISTILSTI QNIAEQTNLL
ALNAAIEAAR AGEQGRGFAV VADEVRVLSQ RTHASTKEIQ QMIETLQATT GKAVGIMDDS
RRLADTSVDD ANEASVSLEQ IHKTVERISD MATQIASAAE EQASVTSEIT RNTVGIRDVS
NDLAQEAHSA AEQAAELSEL SHELEQEIRR FKL