Gene VC0395_A0908 details

Gene Information

• Locus tag: VC0395_A0908
• ID: 5136445
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 925059
• End bp: 926960
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640532366
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_001216854
• Protein GI: 147673234
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00000172893
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTTTGACA TAATGAAATT AACACTAAAA CACAAACTGA TTGGCGCAAG TTTATCGGCA 
GTGGTGGTGA TGGCGACGGC ATTGACTTGG TTTTCCGCCA GTCAATTGCA ACAGCAAACC 
AGCAATGCGG TTTATACTCG TGCTGACGCA ATTTCTTCGA CCGCTGCTAA AGGCATCTCA 
GATTGGATTT CTATCCGTAA ATCAATTAGT ACTGCGTTTA ATGCTCACAT TGAAGCACAA 
GATGTTGTCC CTTATCTGCA ACAAGCGCGC AATGCGGGTG GTTTTGACGA TATTTTTTAC 
GGTACGACTG ATGGCGCGAT GTACCGCTCA CATCCAGAGC GTAATCGTGC GGATTACGAT 
CCACGTACGC GCCCTTGGTA TAAAGATGCA GCCAGTGCGG GTAAGCAGAT CATCACCACC 
GCATACAGTG ATGCGATAAC CGGCGCACTG CTTGTGACGA TTGCAGAACC TGTTCGCCTT 
AACGGTAATA TGAGTGGTGT GGTTGGCGCA GATGTCCTCA TTGATCAGCT GATTGCGGAC 
GTGATCAGCA TGGACGCAGG AAAAAATGCA CAAACCATGT TGATTGATGG CCAAAACGGT 
TCGTTTCTAG CACATCCAGA TAAATCCTTG CTACTGAAGC CTGTGACGAC GCTCTCTTCT 
GCTTTGGACA TGCGCACTAT CGAGCGTGCT GCGAATCAAG GTGAGTTGCT TGCGCTTAAA 
CTGAATGGCG TGGAGAAGTT CTTCTTTTTC ACTGCGGTAC CCGATACACC TTGGTATTTC 
GCAGTACAGA TGGACAGTGA TACCGAATAC GCCTCTCATT CTGAGTTATT AACAGGCCTT 
ATCACTACTG CGTTACTGAT CACTGTGATT GTGATTGTGG TTGTGATTGT CTCTTGGCTC 
GTTAGCTTCT TGTTCCGTGA TTTGGGTCGT GTATCGAAAG CGCTGGAGGA AATTGCCTCT 
GGTGATGCCG ATTTGACACA ACGTTTAGAA CCTCGCAGTG ATGATGAAGT CGGACAACTG 
GCAAGCAACT TCAATACCTT TGTGAGCAAC ATGCACACCA TGGTACTCAA GTTAAGCCAT 
GTTTCAGCCG CATTGGCGCA GCAGTCGAAA GTGACGGCGG CACAAGCGGA AGAGCGCAGT 
AGCCGAATTC GCTTGCAACA AGACGAAATC AATATGGTGG CTACCGCAAT TAATGAGATG 
GCTGCTGCCA CTCAAGAAAT TGCGGGTAAT GCGGATCACA CGGCGCAAAA CGCAGGTGAA 
GCCGTGACGG CGTGTGTCCA TGGCGCGGGT CAAGTCACTC AAACGCAGCG TTCGATTCAA 
TCTTTGGCTG AAGAAGTACA AGTCGCGACC GAAGTTATTC AAGAGCTGGA AGCACATGGT 
CACCAAATCA GTACGATTCT GTCGACGATT CAGAACATCG CTGAACAGAC CAACCTACTG 
GCGCTGAATG CGGCCATTGA AGCTGCCCGT GCGGGTGAGC AAGGACGTGG TTTTGCTGTC 
GTGGCTGATG AAGTTCGTGT GTTGAGTCAA CGTACCCACG CGTCGACCAA AGAAATCCAG 
CAGATGATTG AAACGCTGCA AGCCACCACA GGTAAAGCGG TAGGTATTAT GGACGACAGT 
CGTCGCCTCG CGGACACCAG TGTTGATGAT GCGAATGAAG CTTCGGTTAG CTTGGAGCAG 
ATCCATAAAA CTGTAGAACG TATCAGTGAT ATGGCGACGC AAATTGCGTC AGCGGCTGAA 
GAGCAAGCTT CTGTGACTTC GGAGATCACT CGCAATACCG TAGGTATTCG TGATGTTTCA 
AATGATCTCG CGCAAGAAGC TCACTCCGCT GCTGAACAAG CTGCAGAGTT GTCTGAACTG 
TCTCATGAGT TAGAACAAGA GATCCGTCGT TTTAAACTGT AA 

 

Protein sequence

MFDIMKLTLK HKLIGASLSA VVVMATALTW FSASQLQQQT SNAVYTRADA ISSTAAKGIS 
DWISIRKSIS TAFNAHIEAQ DVVPYLQQAR NAGGFDDIFY GTTDGAMYRS HPERNRADYD 
PRTRPWYKDA ASAGKQIITT AYSDAITGAL LVTIAEPVRL NGNMSGVVGA DVLIDQLIAD 
VISMDAGKNA QTMLIDGQNG SFLAHPDKSL LLKPVTTLSS ALDMRTIERA ANQGELLALK 
LNGVEKFFFF TAVPDTPWYF AVQMDSDTEY ASHSELLTGL ITTALLITVI VIVVVIVSWL 
VSFLFRDLGR VSKALEEIAS GDADLTQRLE PRSDDEVGQL ASNFNTFVSN MHTMVLKLSH 
VSAALAQQSK VTAAQAEERS SRIRLQQDEI NMVATAINEM AAATQEIAGN ADHTAQNAGE 
AVTACVHGAG QVTQTQRSIQ SLAEEVQVAT EVIQELEAHG HQISTILSTI QNIAEQTNLL 
ALNAAIEAAR AGEQGRGFAV VADEVRVLSQ RTHASTKEIQ QMIETLQATT GKAVGIMDDS 
RRLADTSVDD ANEASVSLEQ IHKTVERISD MATQIASAAE EQASVTSEIT RNTVGIRDVS 
NDLAQEAHSA AEQAAELSEL SHELEQEIRR FKL