Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0712 |
Symbol | |
ID | 6114946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 976085 |
End bp | 977968 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641632197 |
Product | methyl-accepting chemotaxis sensory transducer with Cache sensor |
Protein accession | YP_001759102 |
Protein GI | 170725076 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0412159 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000400753 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCTTAA CGATCAAACG TAAAATGCAG ATAGCAGTGC TGGCGATCTG TGCAACCATC AGCATTGTTC AATCATATAT ATCTATAACT CAACTTGAGA GGGAAACATC CAGTTCTATC AGTGATAGTA TTCACCAAAC CAGCCAAACA ACCAGCCAAT ACATTACTGA GTGGCTTAAA ACCCGCAAAA AGATACTATT AACCAATGAA AGATTAATCT CCCATAGCTC AGATGTTGAA CGCGAGATGC TGTTCACTCT AAGAGCCGGT GATTTTATGT CGGTATACGC AGGACTTGCC GATGGAACAG TTATCTTCGG GAACAAAGAG GAAGTTTGGC CTGACAACTA CGATCCTAGA AATAGAAATT GGTACCTTAA AGCAAAAAGT AGCAGTGAGA TAATAGTCAC TGAACCCTAC GCTGACTTTG ATGGCAGCAC AGTCATAACC TTAGCTAAGG CTTTTTCTGG CCAGCTAAAT GGCGTTCTCG CAGCTGATTT AACGGTCGAT CATATTGCAA GACGTGTCAA AGATCTTGAG ATCCCAAACA ATGGTTTCGC ATTTTTACTT GATGAGAATC ATAAAATATT AGCTTACTCT GACGAATCAA AACTACACCA AGCAGCTGAT AGAATCGATC CTTACCTAAC CTCCTCCACC ATACAGAAGA TGCGTGATAG TAATACGCTG GAAACCGCTA ACTGGGGCTA TGATAAACAG GAAAAACTAC TGCAACTGAC CCCAATTCAA GGAACAGGCT GGACCTTAGG GGTTATCGAA GATAAGGGGA TAGCATTTGC CCCAGTTAAG CAGGAGATCA ACAAGATCTT GCTAGCAGAC AGCTTACTTT TCACCCTAAT CTTTATCCTA GCAAGTTTGG CAATTAACCG CCTTTTTGCT CCATTAAATA TGCTCTCTAA AGCAGTAAAA TCTCTCTCTG AAGGCAATGG AGATCTGACT CGTAGATTTG AAGTAAAACA GCAAGATGAG ATAGGTCTAT TATCTGGCTA TATGAATGAT TTCCTAGAGA ATCTTCAAAC CATAATGACC TCGCTCACCA CTGATGTTCA AGGGCTAAGT CAACAGATAG ACCGTTCACT CATTTTAGCG AATCAAGCCA GTGAAGGGGT CAGTCACCAA CATCAGGATG TGGCTCAAAT TGCCACAGCT ATTCACGAGA TGTCGGCGGC GGCAAATGAG GTAGCCAATC ATGCGGAAGT AACCGCAAGT GCAGCTCAAG CATCAGCCCA ATCCTGTCAA CAGGGACAAG CTATAATCTC AAAAAGCAAT GACTCCATTG CCCAGCTCTC CACTCAACTG AGCTCAACCA CAAAAGTCGT CAACCAACTT GAGAGTAACT CGGCTGAGAT CAACCAGATC ATCTCAACAA TTCAAGGGAT TGCTGAACAG ACCAATTTAT TGGCACTCAA TGCCGCAATT GAAGCAGCAC GTGCCGGAGA GCAGGGACGA GGATTTGCTG TTGTTGCTGA TGAAGTTAGG GTATTAAGCC AAAGAACGCA CGATTCAACT GAGGAGATAC GCCAGATGAT CTCCAGCTTG CAGGAAAACA GCCAACAAGT AGTTCAAAGT ATGATGACCA GTACCGAGCT TGCCAATGAG AGTGTTTTGT TTGCCGATAA AGCTCAAAGC AGTTTAGGGT TGATCACCAA CTCAATATCT GAGATATCTG ACATGGCAAC CCAGATAGCC AGTGCCGTTG AGGAGCAAAG AGCTGTATCT GAAGAGATAA GCAAAAACAC TCAAGCGATC AACGATGTAT CAAACTCATT GGCACAACAA ACCCAAGAGG TAAGTGATAG TGCAGATACA ATGCAACTGA TCTCAGCAAA CATAAGCAAG CAAATAACTC AGTTTAAAAT TTGA
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Protein sequence | MTLTIKRKMQ IAVLAICATI SIVQSYISIT QLERETSSSI SDSIHQTSQT TSQYITEWLK TRKKILLTNE RLISHSSDVE REMLFTLRAG DFMSVYAGLA DGTVIFGNKE EVWPDNYDPR NRNWYLKAKS SSEIIVTEPY ADFDGSTVIT LAKAFSGQLN GVLAADLTVD HIARRVKDLE IPNNGFAFLL DENHKILAYS DESKLHQAAD RIDPYLTSST IQKMRDSNTL ETANWGYDKQ EKLLQLTPIQ GTGWTLGVIE DKGIAFAPVK QEINKILLAD SLLFTLIFIL ASLAINRLFA PLNMLSKAVK SLSEGNGDLT RRFEVKQQDE IGLLSGYMND FLENLQTIMT SLTTDVQGLS QQIDRSLILA NQASEGVSHQ HQDVAQIATA IHEMSAAANE VANHAEVTAS AAQASAQSCQ QGQAIISKSN DSIAQLSTQL SSTTKVVNQL ESNSAEINQI ISTIQGIAEQ TNLLALNAAI EAARAGEQGR GFAVVADEVR VLSQRTHDST EEIRQMISSL QENSQQVVQS MMTSTELANE SVLFADKAQS SLGLITNSIS EISDMATQIA SAVEEQRAVS EEISKNTQAI NDVSNSLAQQ TQEVSDSADT MQLISANISK QITQFKI
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