Gene Swoo_0712 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0712 
Symbol 
ID6114946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp976085 
End bp977968 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content43% 
IMG OID641632197 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001759102 
Protein GI170725076 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0412159 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000400753 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCTTAA CGATCAAACG TAAAATGCAG ATAGCAGTGC TGGCGATCTG TGCAACCATC 
AGCATTGTTC AATCATATAT ATCTATAACT CAACTTGAGA GGGAAACATC CAGTTCTATC
AGTGATAGTA TTCACCAAAC CAGCCAAACA ACCAGCCAAT ACATTACTGA GTGGCTTAAA
ACCCGCAAAA AGATACTATT AACCAATGAA AGATTAATCT CCCATAGCTC AGATGTTGAA
CGCGAGATGC TGTTCACTCT AAGAGCCGGT GATTTTATGT CGGTATACGC AGGACTTGCC
GATGGAACAG TTATCTTCGG GAACAAAGAG GAAGTTTGGC CTGACAACTA CGATCCTAGA
AATAGAAATT GGTACCTTAA AGCAAAAAGT AGCAGTGAGA TAATAGTCAC TGAACCCTAC
GCTGACTTTG ATGGCAGCAC AGTCATAACC TTAGCTAAGG CTTTTTCTGG CCAGCTAAAT
GGCGTTCTCG CAGCTGATTT AACGGTCGAT CATATTGCAA GACGTGTCAA AGATCTTGAG
ATCCCAAACA ATGGTTTCGC ATTTTTACTT GATGAGAATC ATAAAATATT AGCTTACTCT
GACGAATCAA AACTACACCA AGCAGCTGAT AGAATCGATC CTTACCTAAC CTCCTCCACC
ATACAGAAGA TGCGTGATAG TAATACGCTG GAAACCGCTA ACTGGGGCTA TGATAAACAG
GAAAAACTAC TGCAACTGAC CCCAATTCAA GGAACAGGCT GGACCTTAGG GGTTATCGAA
GATAAGGGGA TAGCATTTGC CCCAGTTAAG CAGGAGATCA ACAAGATCTT GCTAGCAGAC
AGCTTACTTT TCACCCTAAT CTTTATCCTA GCAAGTTTGG CAATTAACCG CCTTTTTGCT
CCATTAAATA TGCTCTCTAA AGCAGTAAAA TCTCTCTCTG AAGGCAATGG AGATCTGACT
CGTAGATTTG AAGTAAAACA GCAAGATGAG ATAGGTCTAT TATCTGGCTA TATGAATGAT
TTCCTAGAGA ATCTTCAAAC CATAATGACC TCGCTCACCA CTGATGTTCA AGGGCTAAGT
CAACAGATAG ACCGTTCACT CATTTTAGCG AATCAAGCCA GTGAAGGGGT CAGTCACCAA
CATCAGGATG TGGCTCAAAT TGCCACAGCT ATTCACGAGA TGTCGGCGGC GGCAAATGAG
GTAGCCAATC ATGCGGAAGT AACCGCAAGT GCAGCTCAAG CATCAGCCCA ATCCTGTCAA
CAGGGACAAG CTATAATCTC AAAAAGCAAT GACTCCATTG CCCAGCTCTC CACTCAACTG
AGCTCAACCA CAAAAGTCGT CAACCAACTT GAGAGTAACT CGGCTGAGAT CAACCAGATC
ATCTCAACAA TTCAAGGGAT TGCTGAACAG ACCAATTTAT TGGCACTCAA TGCCGCAATT
GAAGCAGCAC GTGCCGGAGA GCAGGGACGA GGATTTGCTG TTGTTGCTGA TGAAGTTAGG
GTATTAAGCC AAAGAACGCA CGATTCAACT GAGGAGATAC GCCAGATGAT CTCCAGCTTG
CAGGAAAACA GCCAACAAGT AGTTCAAAGT ATGATGACCA GTACCGAGCT TGCCAATGAG
AGTGTTTTGT TTGCCGATAA AGCTCAAAGC AGTTTAGGGT TGATCACCAA CTCAATATCT
GAGATATCTG ACATGGCAAC CCAGATAGCC AGTGCCGTTG AGGAGCAAAG AGCTGTATCT
GAAGAGATAA GCAAAAACAC TCAAGCGATC AACGATGTAT CAAACTCATT GGCACAACAA
ACCCAAGAGG TAAGTGATAG TGCAGATACA ATGCAACTGA TCTCAGCAAA CATAAGCAAG
CAAATAACTC AGTTTAAAAT TTGA
 
Protein sequence
MTLTIKRKMQ IAVLAICATI SIVQSYISIT QLERETSSSI SDSIHQTSQT TSQYITEWLK 
TRKKILLTNE RLISHSSDVE REMLFTLRAG DFMSVYAGLA DGTVIFGNKE EVWPDNYDPR
NRNWYLKAKS SSEIIVTEPY ADFDGSTVIT LAKAFSGQLN GVLAADLTVD HIARRVKDLE
IPNNGFAFLL DENHKILAYS DESKLHQAAD RIDPYLTSST IQKMRDSNTL ETANWGYDKQ
EKLLQLTPIQ GTGWTLGVIE DKGIAFAPVK QEINKILLAD SLLFTLIFIL ASLAINRLFA
PLNMLSKAVK SLSEGNGDLT RRFEVKQQDE IGLLSGYMND FLENLQTIMT SLTTDVQGLS
QQIDRSLILA NQASEGVSHQ HQDVAQIATA IHEMSAAANE VANHAEVTAS AAQASAQSCQ
QGQAIISKSN DSIAQLSTQL SSTTKVVNQL ESNSAEINQI ISTIQGIAEQ TNLLALNAAI
EAARAGEQGR GFAVVADEVR VLSQRTHDST EEIRQMISSL QENSQQVVQS MMTSTELANE
SVLFADKAQS SLGLITNSIS EISDMATQIA SAVEEQRAVS EEISKNTQAI NDVSNSLAQQ
TQEVSDSADT MQLISANISK QITQFKI