Gene Shew_0237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0237 
Symbol 
ID4921909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp252445 
End bp254343 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content58% 
IMG OID640161761 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001092368 
Protein GI127511171 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.997473 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTCA AGAAATCACT CGTGGCCTCT ATGGTCACCT TAGTCGCCCT CTGCCTGTTG 
ATCTCGAACT GGCTCTCCTA CGTCCAGATT AAAGAGGCCA CCATCGCCAG GGTTAACGAC
AAACTCACCG GCGTCACCCG TAACGAGTCG GCCAAGGTTG CCACCTGGTT TGGCGCCAAG
GCCCAGGCAA TGGATGAACT GGCCCGCCAC TACCGTTTGG GGAGTTACCA GGACAACTAT
GTCAACACCG CGCGTCTCGC CACAGATCTC TCCGGGGTCG CCCGCATCTA TTTCGGCTTC
GATGACGGCA GCGCCTACTC CACCGAAACC GGCGACAAGT GGCTAAACGG CAAGGCGATC
CCCGGCAAGT ACGATCCCAG AACCCGCCCC TGGTATCAGC AGGGTAAGGC CACAACTCAG
CTGGACGTCA CCGACATCTA CATAGACGAC GGTTCGGGCC ACAAGGTGAT CTCCATCCTG
AAGAACCTGG GCGACGGCGT GGTGCTGGGT GATATAGAAC TCACCTATCT TCATGATGTT
GTCAGTGCCA TAGATTATCC TGGGGCGGTC GCCCTCATCA CAGATCAAAC CGGCAAGGTA
TTGGCGTCAG AATCCCCCAC CCTGGTCAGT GGCAGCCGCT TCAGCGACTT CGGCCTACCT
CAGGTGCAGC AGAAAATCAT CGGTAGCGAC GAGGTGATGC AGGAATATCG CATCGACGGC
GTCGATAAGC TGGGCTTCTC GAAAGCCATC CCCCTGGTTA ATGGCAAGCA GTGGTTCCTC
TTCATCGGCC TGGACAAGTC GAACGCCTAC GCCGTGGTCG ACCAGGCCCT TACCAGCGCC
CTCGTCTCTT CCGCCATCAT GTTGCTGTGC GCCATCAGCA TCTTGCTTGG GGTCCTGTAC
CTCCTCTATC GCCCTATCTT GTCGCTCAAG GCCATGGTTA CCGAACTGTC TAAGGGCAAC
GGCGATCTCA CCAAACGACT CGAGATACAT TGCGAGGACG ATCTGGGGCA GATCTCCATG
GGGATCAATC AGTTTATCGC CAACCTGCAG GCCATGATGC GCGAGGTGCT GCAAGCCTCG
GCCCATATCT CAGGCAGTGT CGAGCGACTC AATGGGGAGA CAGAGACCAA TCGCCATATC
CTGTCGGCTC ACACCAAAGA GACAGAGCAG ATAGTCGCCG CGGTGGAAGA GATGAGCGCC
ACCGCCAACG ACGTCGCCCA AAATGGCAGC GAGACCGCCT CCTTTACCCA ACTCACCAAC
GAACAGGCGC TGGCATCGAA GCAGGTAGTG GCTCAGGCCA CAGAGACGGT CAACCGCCTA
GTTAGGGAGG TGGAACATAC CGCCGACAAG ATAGGTCAGA TCGATCGTGA CACCATCAAT
ATCACCCAGG TGCTCAAGGT GATTGGTGAC ATCGCCGACC AAACCAACCT ACTGGCCCTC
AACGCCGCCA TCGAGGCCGC TCGAGCCGGC GAGCAGGGAC GGGGATTTGC CGTGGTGGCC
GACGAGGTGC GGGCCCTTGC CGCGCGCACC CAGGACAGCA CGGCGGAAAT TGAGGAGACA
CTAAGCAATC TCAGAGACGC CTCTAACAGC GCGATCCACT CGATGGAGGT CACCAAGCAG
ACCTGTCTGG AAACCGCCAG CACCACTGAG AGGGTCGCCA CGGATCTCGA CGCCATCGGC
AGTTCGGTTA ATCAGATCAA CGACCTGAAC ACCCAGATCG CCACCGCCGC CGAAGAGCAA
AGCTCTGTCT CGGCCGAGAT CACCCGCAAC ATGAGCGCCA TCTGCGACAT GGCCAACGAA
CTGGCTCGCA GCGGCGAGTC GAGCCGCAAC GAAACCGTTA ATCTGGCCAC CGCCAATCAG
CAGCTGGAAC AGATAGTGGG ACAGTTCAAA CTCGATTGA
 
Protein sequence
MGFKKSLVAS MVTLVALCLL ISNWLSYVQI KEATIARVND KLTGVTRNES AKVATWFGAK 
AQAMDELARH YRLGSYQDNY VNTARLATDL SGVARIYFGF DDGSAYSTET GDKWLNGKAI
PGKYDPRTRP WYQQGKATTQ LDVTDIYIDD GSGHKVISIL KNLGDGVVLG DIELTYLHDV
VSAIDYPGAV ALITDQTGKV LASESPTLVS GSRFSDFGLP QVQQKIIGSD EVMQEYRIDG
VDKLGFSKAI PLVNGKQWFL FIGLDKSNAY AVVDQALTSA LVSSAIMLLC AISILLGVLY
LLYRPILSLK AMVTELSKGN GDLTKRLEIH CEDDLGQISM GINQFIANLQ AMMREVLQAS
AHISGSVERL NGETETNRHI LSAHTKETEQ IVAAVEEMSA TANDVAQNGS ETASFTQLTN
EQALASKQVV AQATETVNRL VREVEHTADK IGQIDRDTIN ITQVLKVIGD IADQTNLLAL
NAAIEAARAG EQGRGFAVVA DEVRALAART QDSTAEIEET LSNLRDASNS AIHSMEVTKQ
TCLETASTTE RVATDLDAIG SSVNQINDLN TQIATAAEEQ SSVSAEITRN MSAICDMANE
LARSGESSRN ETVNLATANQ QLEQIVGQFK LD