Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0237 |
Symbol | |
ID | 4921909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 252445 |
End bp | 254343 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640161761 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001092368 |
Protein GI | 127511171 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.997473 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGATTCA AGAAATCACT CGTGGCCTCT ATGGTCACCT TAGTCGCCCT CTGCCTGTTG ATCTCGAACT GGCTCTCCTA CGTCCAGATT AAAGAGGCCA CCATCGCCAG GGTTAACGAC AAACTCACCG GCGTCACCCG TAACGAGTCG GCCAAGGTTG CCACCTGGTT TGGCGCCAAG GCCCAGGCAA TGGATGAACT GGCCCGCCAC TACCGTTTGG GGAGTTACCA GGACAACTAT GTCAACACCG CGCGTCTCGC CACAGATCTC TCCGGGGTCG CCCGCATCTA TTTCGGCTTC GATGACGGCA GCGCCTACTC CACCGAAACC GGCGACAAGT GGCTAAACGG CAAGGCGATC CCCGGCAAGT ACGATCCCAG AACCCGCCCC TGGTATCAGC AGGGTAAGGC CACAACTCAG CTGGACGTCA CCGACATCTA CATAGACGAC GGTTCGGGCC ACAAGGTGAT CTCCATCCTG AAGAACCTGG GCGACGGCGT GGTGCTGGGT GATATAGAAC TCACCTATCT TCATGATGTT GTCAGTGCCA TAGATTATCC TGGGGCGGTC GCCCTCATCA CAGATCAAAC CGGCAAGGTA TTGGCGTCAG AATCCCCCAC CCTGGTCAGT GGCAGCCGCT TCAGCGACTT CGGCCTACCT CAGGTGCAGC AGAAAATCAT CGGTAGCGAC GAGGTGATGC AGGAATATCG CATCGACGGC GTCGATAAGC TGGGCTTCTC GAAAGCCATC CCCCTGGTTA ATGGCAAGCA GTGGTTCCTC TTCATCGGCC TGGACAAGTC GAACGCCTAC GCCGTGGTCG ACCAGGCCCT TACCAGCGCC CTCGTCTCTT CCGCCATCAT GTTGCTGTGC GCCATCAGCA TCTTGCTTGG GGTCCTGTAC CTCCTCTATC GCCCTATCTT GTCGCTCAAG GCCATGGTTA CCGAACTGTC TAAGGGCAAC GGCGATCTCA CCAAACGACT CGAGATACAT TGCGAGGACG ATCTGGGGCA GATCTCCATG GGGATCAATC AGTTTATCGC CAACCTGCAG GCCATGATGC GCGAGGTGCT GCAAGCCTCG GCCCATATCT CAGGCAGTGT CGAGCGACTC AATGGGGAGA CAGAGACCAA TCGCCATATC CTGTCGGCTC ACACCAAAGA GACAGAGCAG ATAGTCGCCG CGGTGGAAGA GATGAGCGCC ACCGCCAACG ACGTCGCCCA AAATGGCAGC GAGACCGCCT CCTTTACCCA ACTCACCAAC GAACAGGCGC TGGCATCGAA GCAGGTAGTG GCTCAGGCCA CAGAGACGGT CAACCGCCTA GTTAGGGAGG TGGAACATAC CGCCGACAAG ATAGGTCAGA TCGATCGTGA CACCATCAAT ATCACCCAGG TGCTCAAGGT GATTGGTGAC ATCGCCGACC AAACCAACCT ACTGGCCCTC AACGCCGCCA TCGAGGCCGC TCGAGCCGGC GAGCAGGGAC GGGGATTTGC CGTGGTGGCC GACGAGGTGC GGGCCCTTGC CGCGCGCACC CAGGACAGCA CGGCGGAAAT TGAGGAGACA CTAAGCAATC TCAGAGACGC CTCTAACAGC GCGATCCACT CGATGGAGGT CACCAAGCAG ACCTGTCTGG AAACCGCCAG CACCACTGAG AGGGTCGCCA CGGATCTCGA CGCCATCGGC AGTTCGGTTA ATCAGATCAA CGACCTGAAC ACCCAGATCG CCACCGCCGC CGAAGAGCAA AGCTCTGTCT CGGCCGAGAT CACCCGCAAC ATGAGCGCCA TCTGCGACAT GGCCAACGAA CTGGCTCGCA GCGGCGAGTC GAGCCGCAAC GAAACCGTTA ATCTGGCCAC CGCCAATCAG CAGCTGGAAC AGATAGTGGG ACAGTTCAAA CTCGATTGA
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Protein sequence | MGFKKSLVAS MVTLVALCLL ISNWLSYVQI KEATIARVND KLTGVTRNES AKVATWFGAK AQAMDELARH YRLGSYQDNY VNTARLATDL SGVARIYFGF DDGSAYSTET GDKWLNGKAI PGKYDPRTRP WYQQGKATTQ LDVTDIYIDD GSGHKVISIL KNLGDGVVLG DIELTYLHDV VSAIDYPGAV ALITDQTGKV LASESPTLVS GSRFSDFGLP QVQQKIIGSD EVMQEYRIDG VDKLGFSKAI PLVNGKQWFL FIGLDKSNAY AVVDQALTSA LVSSAIMLLC AISILLGVLY LLYRPILSLK AMVTELSKGN GDLTKRLEIH CEDDLGQISM GINQFIANLQ AMMREVLQAS AHISGSVERL NGETETNRHI LSAHTKETEQ IVAAVEEMSA TANDVAQNGS ETASFTQLTN EQALASKQVV AQATETVNRL VREVEHTADK IGQIDRDTIN ITQVLKVIGD IADQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRALAART QDSTAEIEET LSNLRDASNS AIHSMEVTKQ TCLETASTTE RVATDLDAIG SSVNQINDLN TQIATAAEEQ SSVSAEITRN MSAICDMANE LARSGESSRN ETVNLATANQ QLEQIVGQFK LD
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