Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0085 |
Symbol | |
ID | 4920484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 97414 |
End bp | 99330 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640161596 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001092216 |
Protein GI | 127511019 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0647334 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTAA ACATGCTCAC CATCAAGCAG AAGATCTTAC TCACGGTTAC CGTCGCGGTA TTGCTGTCGA CCGTGCTCGT GGGTGTCTTG AGTCAACGTA GCGCCAAGGA AGTCGTCGAG CAGCGCATGC TCACCTCCGA GCTGCCCAAC ACCTTGCAGG CGATCCGCAA CAAGGTGGAG ATGGACATCG CCACCCTGAT GAACGCCGCC GAGCAGCTCG CCAGCAGCAA GATGCTCAAG CAGTGGCTGG TCGAGGGCCG CCCTGCCGAG ACAGAGCCTC TGGTGATCGC CCAGCTCAAG GATGTGCAGC AGCAATATAA GCTGGTGCAA GCCTCCTATG CCGACAGGCA GACCGCCGCT TACTACACCC AGGACGGCTT CTTGCGGATC CTTACCCCGG ATCAGGATGG TTGGTTCTTC AACTATAAAA ACAGCGGCAC AGAGCGCATG CTCAACGTGT TCACCGAGGC CAATGGCGAG GTGAAGCTCT TCATCAACTA CCAACAGCCC AACGACCGCG GCTTGGTGGG ACTGGCCAAG TCGCTGGACG ACATGGTACG CCTGCTGAAA TCCTTCAAGA TCGAAGATAC AGGCTTCGTT TACCTGGTGG ATGCCAAGGG TGACGTCAAG CTGCACTCGG ACACCAGCCA GATTGGCAAG GCCAGTTTGA GTTCACTCTA TGGCGGTAAC GTGACCAGAG AGCTGCTCAA CAAGGGCGAC TTTGGCCTGA CACAGACAGA GCTAGACGGT GAGACATTGC TGGTCGCCAG CAGCTATATT CCCTCAATGG ACTGGTATCT GGTAGCCCAG GTGCCCAGGG CCGAGGTATT CGCCCTGCTG GAAGAGTCGG CCTATCAGAT CCTCGTCTGG ACAGTGCTGA TCGCCGCCGC CTTTATCGGC CTCTCTACCT TCGTCTCCGC CTCGGTGAGC CAGCCCATTG CCAAGGTAGC CGACATGCTG CAAGACATAG GTCAGGGTGA AGGGGATCTG CGCCAACGCC TGCCGGTCGA AGGTAACGAC GAACTAGCGC AGCTGGCCAA GGGCTTCAAC AGCTTTATCG AGAAGATCCA GCACTCCATC ATAGAGGTGA CAGACACCAG CGTGCAGCTG AGTCACGCCG CCAAGGATGT GGCCAATCAG GCCCAGCAGA CCCAGGACGA CAGCCAGCTG CAGAAAGATC AGACCATGAT GGTGGTCACC GCTATCAACG AGATGGGCGC GACCGTGCAC GAGATCGCCG GCAACGCCGC CCAGGCCGCC GACAACGCCA AGGACGCCGA CAACGCCTCC AGCAACGGCC AGATAGTGGT GACCCGCGCC CGCGACACCA TCAATCAGCT GTCTCAGGAT GTGGAACAGG TGGGTAATGT GATCGAATCC TTGGCCACCC ATACCACCTC CATCGGCAGT ATCCTGGATG TGATCCGCGC CGTATCGGAT CAGACCAACC TGCTGGCCCT CAACGCCGCC ATTGAGGCCG CCCGTGCCGG AGAGGCAGGA CGAGGCTTCG CCGTGGTCGC CGAGGAGGTA CGTAACCTGG CCTCACGCAC CGCCGCGTCG ACCGACGAGG TGCAGAAGAT GATCGACAAC CTACAGAGCG AGGCGGCCCG CGCCGTCGAG GCGATGACCC AGAGCAAGAG CCGCAGCCAG GAAGGGGTAC AGGCGGTCGA CGAGGCCAGC CATACCCTGA CGGAGATCAG CCAGCAGATA GGCGCCATAA CTGACATGAA TATTCAGGTC GCGGCGGCCA CCGAGGAGCA GTCTACCGTG GTGGAAGATA TCAACCGCAA CGTCACGGAG ATCAGCGAGA TCACCCAGCG TACCAGCGAG ACCTCCCAGG CAGTGGCCCA GGCCAGCCAG TCGCTCAACC AGCTGGCCCA CAGGCTAGAT ACCTTGGTCG CCGGCTTCAA GGTCTAG
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Protein sequence | MKLNMLTIKQ KILLTVTVAV LLSTVLVGVL SQRSAKEVVE QRMLTSELPN TLQAIRNKVE MDIATLMNAA EQLASSKMLK QWLVEGRPAE TEPLVIAQLK DVQQQYKLVQ ASYADRQTAA YYTQDGFLRI LTPDQDGWFF NYKNSGTERM LNVFTEANGE VKLFINYQQP NDRGLVGLAK SLDDMVRLLK SFKIEDTGFV YLVDAKGDVK LHSDTSQIGK ASLSSLYGGN VTRELLNKGD FGLTQTELDG ETLLVASSYI PSMDWYLVAQ VPRAEVFALL EESAYQILVW TVLIAAAFIG LSTFVSASVS QPIAKVADML QDIGQGEGDL RQRLPVEGND ELAQLAKGFN SFIEKIQHSI IEVTDTSVQL SHAAKDVANQ AQQTQDDSQL QKDQTMMVVT AINEMGATVH EIAGNAAQAA DNAKDADNAS SNGQIVVTRA RDTINQLSQD VEQVGNVIES LATHTTSIGS ILDVIRAVSD QTNLLALNAA IEAARAGEAG RGFAVVAEEV RNLASRTAAS TDEVQKMIDN LQSEAARAVE AMTQSKSRSQ EGVQAVDEAS HTLTEISQQI GAITDMNIQV AAATEEQSTV VEDINRNVTE ISEITQRTSE TSQAVAQASQ SLNQLAHRLD TLVAGFKV
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