More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_1880 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_1371  methyl-accepting chemotaxis transducer  59.34 
 
 
624 aa  707    Pseudomonas putida KT2440  Bacteria  normal  normal  0.318672 
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  98.57 
 
 
643 aa  1253    Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  100 
 
 
628 aa  1274    Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  64.65 
 
 
625 aa  806    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_010322  PputGB1_4443  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.03 
 
 
624 aa  703    Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000033578 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  58.16 
 
 
632 aa  723    Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  71.82 
 
 
626 aa  901    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  55.64 
 
 
629 aa  667    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_4352  methyl-accepting chemotaxis sensory transducer  59.34 
 
 
624 aa  707    Pseudomonas putida F1  Bacteria  normal  normal  0.0132701 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  98.89 
 
 
628 aa  1258    Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_007005  Psyr_0906  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  71.5 
 
 
626 aa  899    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  54.53 
 
 
629 aa  651    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_007005  Psyr_3534  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  57.17 
 
 
629 aa  686    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.667463  normal  0.0882884 
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  78.66 
 
 
626 aa  1014    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  59.14 
 
 
630 aa  723    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  62.74 
 
 
629 aa  780    Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_010501  PputW619_1011  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.31 
 
 
624 aa  719    Pseudomonas putida W619  Bacteria  normal  0.752503  hitchhiker  0.0000000000251926 
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  60.35 
 
 
629 aa  735    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.51 
 
 
630 aa  705    Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  63.69 
 
 
629 aa  818    Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  93.15 
 
 
626 aa  1156    Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  58.16 
 
 
632 aa  723    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  63.06 
 
 
629 aa  793    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  63.54 
 
 
629 aa  816    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  33.78 
 
 
626 aa  356  6.999999999999999e-97  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  33.6 
 
 
627 aa  344  2e-93  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_011989  Avi_0988  methyl-accepting chemotaxis protein  32.29 
 
 
695 aa  332  1e-89  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2364  methyl-accepting chemotaxis sensory transducer  35.39 
 
 
622 aa  330  4e-89  Shewanella baltica OS155  Bacteria  normal  0.493821  n/a   
 
 
-
 
NC_009438  Sputcn32_2121  methyl-accepting chemotaxis sensory transducer  35.88 
 
 
622 aa  326  8.000000000000001e-88  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  34.21 
 
 
623 aa  322  9.000000000000001e-87  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  33.44 
 
 
623 aa  322  1.9999999999999998e-86  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  33.7 
 
 
630 aa  310  4e-83  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0316  methyl-accepting chemotaxis protein  33.94 
 
 
652 aa  310  5e-83  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  33.85 
 
 
630 aa  310  6.999999999999999e-83  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009457  VC0395_A1741  methyl-accepting chemotaxis protein  35.26 
 
 
623 aa  310  8e-83  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.7 
 
 
630 aa  308  3e-82  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  33.7 
 
 
630 aa  306  6e-82  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  33.07 
 
 
622 aa  306  9.000000000000001e-82  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
630 aa  296  6e-79  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  34.51 
 
 
627 aa  294  3e-78  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  33.91 
 
 
630 aa  294  3e-78  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
623 aa  292  1e-77  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  33.8 
 
 
633 aa  291  2e-77  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_009654  Mmwyl1_1383  methyl-accepting chemotaxis sensory transducer  33.55 
 
 
636 aa  290  6e-77  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00353653  normal  0.775857 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.55 
 
 
626 aa  290  7e-77  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  32.55 
 
 
631 aa  289  1e-76  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  33.08 
 
 
630 aa  287  4e-76  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  33.39 
 
 
627 aa  287  4e-76  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  32.76 
 
 
630 aa  286  7e-76  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_0193  methyl-accepting chemotaxis sensory transducer  34.3 
 
 
623 aa  286  7e-76  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  33.02 
 
 
630 aa  286  7e-76  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.02 
 
 
623 aa  285  1.0000000000000001e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_009665  Shew185_4141  methyl-accepting chemotaxis sensory transducer  33.68 
 
 
623 aa  285  1.0000000000000001e-75  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0194  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.68 
 
 
623 aa  285  2.0000000000000002e-75  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4274  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.68 
 
 
623 aa  285  2.0000000000000002e-75  Shewanella baltica OS195  Bacteria  normal  normal  0.179842 
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  32.6 
 
 
623 aa  285  2.0000000000000002e-75  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4557  methyl-accepting chemotaxis protein  33.75 
 
 
623 aa  284  4.0000000000000003e-75  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_0194  methyl-accepting chemotaxis sensory transducer  34.46 
 
 
623 aa  283  7.000000000000001e-75  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3752  methyl-accepting chemotaxis sensory transducer  32.44 
 
 
623 aa  282  1e-74  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0272  methyl-accepting chemotaxis sensory transducer  34.05 
 
 
638 aa  282  1e-74  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00090491  hitchhiker  0.000000349734 
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  34.05 
 
 
642 aa  281  2e-74  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0799  methyl-accepting chemotaxis protein  31.21 
 
 
624 aa  281  2e-74  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  32.51 
 
 
638 aa  281  2e-74  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_008322  Shewmr7_3750  methyl-accepting chemotaxis sensory transducer  33.9 
 
 
638 aa  281  2e-74  Shewanella sp. MR-7  Bacteria  normal  0.666265  normal  0.186245 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  36.8 
 
 
638 aa  281  3e-74  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_008321  Shewmr4_0271  methyl-accepting chemotaxis sensory transducer  33.74 
 
 
638 aa  280  4e-74  Shewanella sp. MR-4  Bacteria  normal  0.758035  hitchhiker  0.0000678809 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.53 
 
 
626 aa  280  4e-74  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  32.99 
 
 
639 aa  280  6e-74  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  34.3 
 
 
626 aa  279  1e-73  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  35.92 
 
 
638 aa  279  1e-73  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0525  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.27 
 
 
632 aa  279  1e-73  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009438  Sputcn32_0323  methyl-accepting chemotaxis sensory transducer  33.16 
 
 
623 aa  278  3e-73  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3017  methyl-accepting chemotaxis sensory transducer  32.39 
 
 
630 aa  275  1.0000000000000001e-72  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  35.21 
 
 
638 aa  275  2.0000000000000002e-72  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  35.85 
 
 
636 aa  274  4.0000000000000004e-72  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1629  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.61 
 
 
623 aa  273  7e-72  Shewanella pealeana ATCC 700345  Bacteria  normal  0.438395  n/a   
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.32 
 
 
627 aa  271  2e-71  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
NC_007511  Bcep18194_B1642  methyl-accepting chemotaxis sensory transducer  30.33 
 
 
599 aa  271  2e-71  Burkholderia sp. 383  Bacteria  normal  normal  0.255489 
 
 
-
 
NC_010086  Bmul_4247  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.95 
 
 
599 aa  271  2e-71  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3449  methyl-accepting chemotaxis sensory transducer  32.45 
 
 
632 aa  271  2e-71  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  33.49 
 
 
636 aa  271  4e-71  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0387  methyl-accepting chemotaxis sensory transducer  34.3 
 
 
638 aa  270  5e-71  Shewanella putrefaciens CN-32  Bacteria  normal  0.408395  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  33.43 
 
 
638 aa  270  8e-71  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  33.43 
 
 
638 aa  270  8e-71  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  37.31 
 
 
639 aa  270  8e-71  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_011663  Sbal223_0279  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
638 aa  269  8.999999999999999e-71  Shewanella baltica OS223  Bacteria  normal  0.983838  normal 
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  33.43 
 
 
641 aa  269  1e-70  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  37.5 
 
 
559 aa  263  6e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001273  methyl-accepting chemotaxis protein  35.2 
 
 
638 aa  261  2e-68  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  34.27 
 
 
713 aa  261  2e-68  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  42.18 
 
 
634 aa  261  3e-68  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008061  Bcen_3992  methyl-accepting chemotaxis sensory transducer  29.7 
 
 
599 aa  260  4e-68  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4375  methyl-accepting chemotaxis sensory transducer  29.7 
 
 
599 aa  260  4e-68  Burkholderia cenocepacia HI2424  Bacteria  normal  0.480091  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  33.16 
 
 
716 aa  259  9e-68  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_010515  Bcenmc03_5980  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.86 
 
 
599 aa  259  1e-67  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2088  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.91 
 
 
617 aa  258  2e-67  Acidovorax ebreus TPSY  Bacteria  normal  0.258516  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  33.15 
 
 
712 aa  257  5e-67  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  33.15 
 
 
712 aa  256  6e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009636  Smed_0489  methyl-accepting chemotaxis sensory transducer  39.83 
 
 
698 aa  256  1.0000000000000001e-66  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.000832175  normal 
 
 
-
 
NC_009784  VIBHAR_05150  adenylyl cyclase class-3/4/guanylyl cyclase  33.59 
 
 
650 aa  254  4.0000000000000004e-66  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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