Gene Sfri_0080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0080 
Symbol 
ID4278164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp93795 
End bp95705 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content43% 
IMG OID638132821 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_748781 
Protein GI114561268 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACAC TTACCATTAA ACAAAAAATA TTACTGACCG TGACGGTTGC TGTATTGCTA 
TCGACGATCT TAGTCGGATT ATTAAGTCAA CGAAGTGCAA AGCAAGTTGT TGAGCAGCGG
ATGCTAAACT CGGAAATGCC GAGCTTACTC ATGCAAATTC GCAATGAAGT CGACCTCGAA
ATCCGTAGTT TAATCAATGC TTCGGAACAG TTAGCGAATA GCCGAATGTT GCTAGAATGG
CTTCAAAATG GTCGCCCTGC TGACCAAGAA AACCTCGTTA TCGCAGAACT TAATGACATG
AAAAATCAAT ACGATTTAGT TCAAGCGTCT TACGCCGACA AAGAAACTGC GGCCTACTAT
ACTCAGGATG GTTTTTTGCG AATATTAAAT CCAGAGCAAG ATGGCTGGTT TTTTGACTAC
CGCGATAGTA AAAAAGAGCG TTTGTTGACG GTTTATACCG AAGCCAATGG TGAAGTAAAA
CTTTTTATTA GTTACCAACA GCCCAATGGT CGTGGCATGG TTAGTCTAGC CAAATCGTTA
GATGATATGG TTAATTTATT GGCTTCATTT AAAATTGAAG ACAGCGGGTT TGTATATTTA
GTTGATACTA AAGGTGAAGT CAAACTGCAT CAAGATACGA ACAAAATAGG TAAAAGCAAA
CTCAGCAACT TGTACCCTAA TGCCAACACT AACCAATTGT TAAATAAAAG TAACTTTAAT
TTAGTCAAAG CCGATGTTAA TGGCCAACAC ATGTTGATTG CCAGTAGCTA CATTGAGTCG
ATGGATTGGT ACTTGGTTGC TCAAGTACCT GAAGCAGAAG TATTTGCCCT GCTACAAAAA
TCGGCTTATC AGATCTTACT ATGGACAATA CTCATCGCGG CGGTATTTAT TGCCATTTCG
ATTACTGTTG CTGGTTCGGT TAGTCGTCCT ATTGCACATA TTGCCGAATT ATTTCGTAAC
ATTGGTGAAG GTGAAGGTGA TTTGCGCCAA AGACTACCGG TTAATGGTGA TGACGAAATT
GCCCAGCTCG CTCGTGGCTT TAATAGCTTC ATCAGCAAAA TCCAAGATAC AGTAGCCGAA
GTTGCTAAAA CCAGTGAGCA GCTTGGTTTA TCGGCACTTG ATGTATCAAA CCAATCCAAT
CAAACATTAG CTGATAGCCA GTTACAAAAA GACCGTACCA TCATGGTTGT TACTGCTATT
AACGAAATGG GCGCCACGGT TAACGAAATT GCTAGCAATG CAGCTCAAGC AGCTGTCACC
GCTCGTGATG CCGATACTGA ATCAGTGGAT GGTCAAAAAG TCGTAACCCG TGCACGTTCG
ACTATCAATC AGTTGTCTAA AGACGTCGAG CAAGTCGGTG AAGTGATTGA GTCACTAGCG
ACGCACACTA AATCGATTGG CAGTATTTTA GATGTTATCC GTGCCATTTC AGAGCAAACA
AACTTACTGG CACTTAACGC CGCGATTGAA GCTGCTCGTG CTGGAGAAGC GGGACGTGGC
TTTGCTGTAG TTGCAGATGA AGTGCGTAAC TTAGCCTCTC GAACTGCGGC GTCGACCAAC
GAAGTGCAAA CTATGATTGA TAAACTTCAA TCAGAAACCA GTCGTGCTGT TAACGCTATG
GAGCAATCTC GTAGCCGCTC ACACGAAGGT GTTACAGCTG TCGATGAAGC AAGCCAGTCG
CTAAGTGGTA TTAGCGAACG TATTGCACTG ATTAGCGATA TGAACATTCA AGTGGCTGCT
GCGACAGAAG AGCAATCTAC TGTGGTTGAA GACATTAATC GTAATGTGAC CGAAATCAAC
GATATTACTC AGCGAACAGC AGATACTGCT CACGCAGCTG CAAATGCGAG TAAATCATTG
AATCAGTTAG CCAGTAGACT TGATATCTTA GTGGCTCGCT TTAAAGTGTA G
 
Protein sequence
MNTLTIKQKI LLTVTVAVLL STILVGLLSQ RSAKQVVEQR MLNSEMPSLL MQIRNEVDLE 
IRSLINASEQ LANSRMLLEW LQNGRPADQE NLVIAELNDM KNQYDLVQAS YADKETAAYY
TQDGFLRILN PEQDGWFFDY RDSKKERLLT VYTEANGEVK LFISYQQPNG RGMVSLAKSL
DDMVNLLASF KIEDSGFVYL VDTKGEVKLH QDTNKIGKSK LSNLYPNANT NQLLNKSNFN
LVKADVNGQH MLIASSYIES MDWYLVAQVP EAEVFALLQK SAYQILLWTI LIAAVFIAIS
ITVAGSVSRP IAHIAELFRN IGEGEGDLRQ RLPVNGDDEI AQLARGFNSF ISKIQDTVAE
VAKTSEQLGL SALDVSNQSN QTLADSQLQK DRTIMVVTAI NEMGATVNEI ASNAAQAAVT
ARDADTESVD GQKVVTRARS TINQLSKDVE QVGEVIESLA THTKSIGSIL DVIRAISEQT
NLLALNAAIE AARAGEAGRG FAVVADEVRN LASRTAASTN EVQTMIDKLQ SETSRAVNAM
EQSRSRSHEG VTAVDEASQS LSGISERIAL ISDMNIQVAA ATEEQSTVVE DINRNVTEIN
DITQRTADTA HAAANASKSL NQLASRLDIL VARFKV