Gene Psyr_2246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2246 
Symbol 
ID3367761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2611442 
End bp2613331 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content59% 
IMG OID637652596 
Producthistidine kinase, HAMP region:Cache: chemotaxis sensory transducer 
Protein accessionYP_235327 
Protein GI66045486 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.265681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.412954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGTC TGGGTTTCAG CAAAAAGATC CTTCTCGCCG CCGCATTGAT TGTGGTCGTG 
GCGTTCAGTG TGTTCATTGT CGTCAATGAC TATCGACAAC GTCAGTCGCT CAAATCCAGC
GTCAAGTCCG AGTTGCAACA ACTGGGTACG CTCACCACAC AAAACATTCA GACCTGGCTG
GAAAGCCGCA TGCAATTGCT GCAGTCGATG TCGCAGCAAA TCGCCGCGGA TGGCAAGGAA
CTGCCCCAGT TGCAGCGTGC CATCGGCCTG CCTGCCTACA GCGAAAGCTT TCAACTGAGC
TACTTTGGCA GCACCGAAGG CGTGATGTTC TCGGTGCCGT CGGCCAATCG CCCGGCTGAC
TACGATCCGC GTGCGCGTGG CTGGTACAAG GCGGCACAGA ATGCGCCGGG CACCATTGTG
ACCGAACCCT ACATCGCGGC ATCCTCTGGC AAGCTGGTCA TGACCATGGC CACACCGGTC
AAGTTTCAGA ATCAGTTCGT GGGCGTGGCC GGTGCTGATA TCGCTCTGGA CAACGTCACC
AAGATCATCA ACTCGCTGAA CTTCGATGGC CATGGCTATG CATTCCTGGT CAGTGCCGAC
GGCAAGATTC TGGTGCATCC GGACAGCAAA CTGGTGCTCA AGAACATCAG TGAAGCCTAC
CCGACCAATA CTCCGAAAAT TACTACCGGC GTGACTGAAA TCGACTCCGG TAAAAATCCG
GAGATCATTT CCTTCACGCC TGTTCAAGGT GTTTCGACGG CCAACTGGTA CGTGGCACTG
GTCCTCGAGC AGGATTCCGC CTACGCCATG TTGGCCGAGT TCCGTGCCTC GGCCATCACC
GCCATGGTGG TAGTGGTGGT GGTGATCATC CTGCTGCTGG GCCTGTTGAT TCGCGTGCTG
ATGCAACCCT TGCATCAGAT GGGTCGGGCG ATGCGTGACA TCGCTGACGG CGAGGGCGAT
CTGACCAAGC GTCTGGCAAT CACCTCGCAG GATGAGTTCG GCGAACTGGC CGAGTCGTTC
AACCGTTTCG TCGAGCGTAT TCACACCTCG ATCCGTGAAG TGGCCTCGAC TGCCGCGCAA
TTGGGCGAGG TTGCCACCCG GGTGGTCAAG GTCTCCAACG CCTCGATGGG TAACTCCGAC
CAGCAGGCCA ACCGTACCGA AAGCGTGGCG GCGGCGATCA ACGAACTGGG CGCAGCAGCC
CAGGAAATCG CCCAGAATGC GGCACGCACC TCGCAGCAGT CGAGTGATGC GAGCGGCCTG
GCCAGCGACG GCCAGAACGT CGTGCAGCAG ACCATCAAGG CGATGAACGA GCTGTCCGGG
AAGATCAGCG AGTCGTGCGT GAACATCGAA AGCCTGAATG GCAAGACTGC CAACATCGGG
CAGATTCTCG AGGTGATCAC CAGCATTTCC CAGCAGACCA ACCTGCTGGC GCTCAACGCA
GCCATCGAGG CAGCGCGTGC CGGTGAAGCA GGGCGCGGGT TCGCGGTAGT GGCCGACGAA
GTACGCAACC TGGCGCATCG CACTCAGGAT TCTGCCCAGC AAGTGCAGAC CATGATCGAA
GAGCTGCAGG TCGGCGCTCG CGACGCAGTG ACCAACATGA CCGAGAGCCA GCGTCAGAGC
GAGGACAGCG TCGGCATCGC CAACCTGGCC GGCGAGCGTC TGGGCAGCGT GACCCGCCGC
ATCGAAGAGA TCAACGGCAT GAACCAGTCG GTCGCGGCGG CAACCGAGGA ACAGACCTCG
GTGGTCGAGT CGATCAATGT CGACATCACT CACATCAACA CCCTCAACCA GCTGGGTGTC
GACAACCTGC GCCAGACCCT GGAAGCCTGC AACTCGCTGG AAGAGCAGGC TGCCCGCCTG
CAGCAACTGG TAGGCAGCTT CCGGATCTGA
 
Protein sequence
MKSLGFSKKI LLAAALIVVV AFSVFIVVND YRQRQSLKSS VKSELQQLGT LTTQNIQTWL 
ESRMQLLQSM SQQIAADGKE LPQLQRAIGL PAYSESFQLS YFGSTEGVMF SVPSANRPAD
YDPRARGWYK AAQNAPGTIV TEPYIAASSG KLVMTMATPV KFQNQFVGVA GADIALDNVT
KIINSLNFDG HGYAFLVSAD GKILVHPDSK LVLKNISEAY PTNTPKITTG VTEIDSGKNP
EIISFTPVQG VSTANWYVAL VLEQDSAYAM LAEFRASAIT AMVVVVVVII LLLGLLIRVL
MQPLHQMGRA MRDIADGEGD LTKRLAITSQ DEFGELAESF NRFVERIHTS IREVASTAAQ
LGEVATRVVK VSNASMGNSD QQANRTESVA AAINELGAAA QEIAQNAART SQQSSDASGL
ASDGQNVVQQ TIKAMNELSG KISESCVNIE SLNGKTANIG QILEVITSIS QQTNLLALNA
AIEAARAGEA GRGFAVVADE VRNLAHRTQD SAQQVQTMIE ELQVGARDAV TNMTESQRQS
EDSVGIANLA GERLGSVTRR IEEINGMNQS VAAATEEQTS VVESINVDIT HINTLNQLGV
DNLRQTLEAC NSLEEQAARL QQLVGSFRI