Gene PSPTO_2480 details

Gene Information

• Locus tag: PSPTO_2480
• ID: 1184132
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 2739439
• End bp: 2741328
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637393853
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_792292
• Protein GI: 28869673
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATC TGGGCTTCAG CAAGAAAATC CTTCTGGCCG CCGCGCTTAT CGTGGTTGTT 
GCGTTCAGCG TATTTATTGT CATCAATGAC TATCGACAAC GTCAGTCGCT CAAATCCAGT 
GTCAAGTCGG AGCTGCAACA ACTGGGTACA TTGACCACGC AGAACATTCA GACATGGCTG 
GAAAGCCGCA TTCAGTTGCT GCAATCGATG TCCCAGCAAG TCGCCGTGGA CGGCAAGGAG 
CTGCCGCAGT TGCAGCGTGC CATTGGCCTG CCAACGTACA GCGACAACTT CCAGCTCAGT 
TATTTTGGCA GCACCGAAGG CGTGATGTTT TCGGTGCCGG CCGGTAATCG CCCTGCAGAT 
TACGACCCGC GTGCACGGGG CTGGTACAAG GCCGCACAAA ATGCGCCGGG CACCATCGTT 
ACCGAACCGT ATATTGCAGC GTCGTCCGGC AAACTGGTCA TGACCATTGC CACGCCGGTC 
AAGATTCAGA ACCAGCTTGC CGGTGTCGCC GGTGCTGACA TCTCGCTGGA CAGCGTTTCC 
AAAATCATCA ACTCGCTGAA CTTCGATGGT CACGGTTATG CGTTTCTGGT CAGCGCCGAA 
GGCAAGATTC TGGTGCATCC GGACAGCAAG CTGGTGCTCA AGAACATCAA TGAAGCCTAC 
CCGGTAAATA CACCGAAAAT CGCCACGGGC GTGACTGAAA TCGATTCTGG CAAACAGCCC 
GAGATCATCT CGTTCACGCC GGTTCAGGGC GTGGCGACCG CCAACTGGTA CGTGGCGCTG 
GTGCTGGAGC AGGATTCTGC CTACGCCATG CTCACCGAGT TCCGCACCTC GGCCATCACG 
GCAATGGTCG TTGTGGTGAT GGTGATCATT CTGCTGCTGG GCCCGTTGAT CCGCGTGCTT 
ATGCAGCCGC TGCACCAGAT GGGCCGTGCG ATGCGCGATA TCGCTGACGG TGAGGGCGAT 
CTGACCAAGC GTCTGGCCAT CACTTCGCAC GATGAGTTCG GCGCATTGGC AGAGTCGTTC 
AACCACTTTG TCGAGCGTAT TCACACCTCG ATTCGCGAAG TGGCCTCCAC CGCAGCGCAA 
CTGGGCGAAG TCGCCACGCG AGTGGTCAAG GTCTCCAACG CCTCGATGAG CAACTCCGAC 
CAGCAGGCCA ATCGCACCGA AAGCGTGGCC GCTGCGATCA ACGAACTGGG CGCCGCCGCA 
CAGGAAATCG CCCAGAACGC GGCACGCACC TCGCAACAGT CCAGCGATGC CAGCGGGCTG 
GCCAGCGACG GCCAGGGCGT GGTGCAGCAG ACCATCAAGG CGATGAACGA GCTGTCCGGC 
AAGATCAGCG AGTCGTGTGT GAACATCGAG AGCCTGAATG GCAAGACTGC TAACATCGGG 
CAGATTCTCG AAGTGATCAC CAGCATTTCC CAGCAAACCA ATCTGTTGGC GCTTAACGCT 
GCTATTGAGG CCGCACGCGC CGGTGAGGCG GGTCGCGGTT TCGCCGTGGT GGCTGACGAG 
GTGCGCAACC TGGCACACCG CACTCAGGAC TCGGCGCAAC AAGTGCAAAA GATGATTGAA 
GAGTTACAGG TCGGCGCTCG TGAAGCGGTG GTCAACATGA CTGAAAGCCA GCGTCAGAGC 
GAGGACAGCG TGGGCATCGC CAACCTGGCC GGCGAGCGTC TGGGCAGCGT GACCCGCCGT 
ATCGAAGAGA TCAACGGCAT GAACCAGTCG GTGGCGGCTG CAACAGAGGA ACAGACCTCG 
GTGGTTGAGT CGATCAACGT CGACATCACC CACATCAACA CCCTCAACCA ACAGGGCGTC 
GACAACCTGC GCCAGACTCT GGAAGCCTGC AACTCCCTGG AAGAACAAGC AGCTCGTCTG 
CAACAACTGG TCGGCAGCTT CCGGATCTGA 

 

Protein sequence

MKNLGFSKKI LLAAALIVVV AFSVFIVIND YRQRQSLKSS VKSELQQLGT LTTQNIQTWL 
ESRIQLLQSM SQQVAVDGKE LPQLQRAIGL PTYSDNFQLS YFGSTEGVMF SVPAGNRPAD 
YDPRARGWYK AAQNAPGTIV TEPYIAASSG KLVMTIATPV KIQNQLAGVA GADISLDSVS 
KIINSLNFDG HGYAFLVSAE GKILVHPDSK LVLKNINEAY PVNTPKIATG VTEIDSGKQP 
EIISFTPVQG VATANWYVAL VLEQDSAYAM LTEFRTSAIT AMVVVVMVII LLLGPLIRVL 
MQPLHQMGRA MRDIADGEGD LTKRLAITSH DEFGALAESF NHFVERIHTS IREVASTAAQ 
LGEVATRVVK VSNASMSNSD QQANRTESVA AAINELGAAA QEIAQNAART SQQSSDASGL 
ASDGQGVVQQ TIKAMNELSG KISESCVNIE SLNGKTANIG QILEVITSIS QQTNLLALNA 
AIEAARAGEA GRGFAVVADE VRNLAHRTQD SAQQVQKMIE ELQVGAREAV VNMTESQRQS 
EDSVGIANLA GERLGSVTRR IEEINGMNQS VAAATEEQTS VVESINVDIT HINTLNQQGV 
DNLRQTLEAC NSLEEQAARL QQLVGSFRI