Gene Shewana3_0272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0272 
Symbol 
ID4479180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp305555 
End bp307471 
Gene Length1917 bp 
Protein Length638 aa 
Translation table11 
GC content52% 
IMG OID639724804 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_867921 
Protein GI117918729 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00090491 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000349734 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATATTGA ATAACCTTAC TATTAAGCAG AAAATCCTGC TGACAGTGAC ATTTGCTGTG 
CTGCTGTCGA CCATACTCGT GGGCGTCCTC AGCCAACGCA GTGCAAAAAG CGTGGTACAG
CAGCGTATGC TCGGGTCGGA AATGCCCAGC CTAATGATGC AGATCCGCAA CAAGATTGAG
CTAGATATTT CGAGCTTAAT GAATGCCGCC GAACAACTCG CCAGCAGCCG CATGTTACTG
CAATGGCTTG AAAACGGTCG TCCGCAGGAG CAAGAACCGC AAGTCGTTGC CCAACTGAAG
GACATCACCC GCCAATATCA TTTGGCCCAA GCCTCCTACG CCGATAGACA AACCGCCGCC
TACTACACCC AAGATGGTTT TTTACGTGTA CTCACCCCTG CGCAGGATGG TTGGTTTTTT
GGTTATCGTG ACAGCGGCCA AGAGCGGATG CTTAACGTGT TTACCGAAGC CAATGGCGAA
GTAAAACTCT TTATTAATTA TCAGCAACCT AATGGCCGCG GACTCGTTGG CCTCGCCAAA
TCCCTCGATG ATATGGTGCG TCTACTAGGT TCCTTTAAGA TTGAAGAAAC TGGCTTTGTC
TACTTAGTCG ATGCTAAAGG TGAGGTAAAA CTGCATCCCG ACGCCAGTCA AATTGGCAAG
AGCAGCCTCA AGAGCTTGTA CTCGGGTGCG AATATCAGCT CATTGCTCAA TCGTAGCGAC
TTCAACCTGA TCGATACCCA AATACAAGGT GAAAACACTT TCGTAGCCAG CAGCTATATT
CCCTCCATGG ATTGGTATTT AGTGGCACAA GTGCCCGAAG CCGAAGTGTT CGCCCTGTTG
ACGGATGCCG CCTACCAGAT CTTAATTTGG ACCTTAATCA TTGCCGCGGG CTTTATCATG
CTGGCAATTG TGGTGGCCGG TTCAGTAAGC CGCCCTATCG CACAAGTCGC AGCCATGTTC
CGTGATATCG GCGAAGGAGA AGGCGATTTA CGTCAGCGCC TCCCCGTTAA AGGCGAAGAT
GAAATTGCCC AACTGGCACA AGGGTTTAAT AGCTTTATCA GCAAAATCCA AGACTCAGTG
ATTGAAGTTG CGCAGACCAG CGAACAGCTT GGCTTCTCGG CGAAGGATGT GTCGAATCAG
GCGCAGCAAA CCCTTGAAGA CAGCCATGAG CAAAAAGATC GCACTATGAT GGTTGTGACC
GCCATCAATG AGATGGGCGC AACGGTGAAT GAAATCGCCA GCAATGCCGC CCAAGCAGCT
GTTGCGGCCA AGGATGCCGA TACCGAATCC AATAGCGGCC AAGTGGTGGT GACCCGTGCT
CGGGATACCA TCAATCAACT CTCCCAAGAT GTGGAACAAG TCGGTGAAGT GATTGAATCC
CTTGCGACTC ATACCAAGTC TATCGGCGGC ATTCTCGATG TGATCCGCGC GATCTCTGAG
CAAACTAACC TGTTAGCGCT GAACGCCGCG ATTGAAGCCG CCCGTGCCGG TGAGGCGGGA
CGAGGCTTTG CCGTGGTAGC CGATGAAGTC CGTAATCTGG CATCGCGCAC CGCCGCATCG
ACCAACGAAG TCCAAGGAAT GATCGACAAG TTGCAATCCG AGGCCAGCCG AGCAGTGAAT
GCCATGGCCC AAAGCCGTGC GCGCTCCCAC GAAGGGGTGG CCGCCGTCGA TGAGGCCAGC
CAATCTCTGG TAGGCATTAG TGACCGTATT GGCCTGATCA GCGATATGAA CATTCAAGTC
GCAGCGGCGA CGGAAGAGCA ATCGACCGTA GTGGAAGACA TCAACCGTAA CGTGACCGAA
ATTAACGAGA TCACCCAGCG CACCGCCAGT ACGGCACAGG CTGCGGCACA GGCGAGCTTA
GCGCTAAACC AACTCGCCCA CCGCTTAGAC ACCTTAGTGG CGAAATTTAA GGTGTAA
 
Protein sequence
MILNNLTIKQ KILLTVTFAV LLSTILVGVL SQRSAKSVVQ QRMLGSEMPS LMMQIRNKIE 
LDISSLMNAA EQLASSRMLL QWLENGRPQE QEPQVVAQLK DITRQYHLAQ ASYADRQTAA
YYTQDGFLRV LTPAQDGWFF GYRDSGQERM LNVFTEANGE VKLFINYQQP NGRGLVGLAK
SLDDMVRLLG SFKIEETGFV YLVDAKGEVK LHPDASQIGK SSLKSLYSGA NISSLLNRSD
FNLIDTQIQG ENTFVASSYI PSMDWYLVAQ VPEAEVFALL TDAAYQILIW TLIIAAGFIM
LAIVVAGSVS RPIAQVAAMF RDIGEGEGDL RQRLPVKGED EIAQLAQGFN SFISKIQDSV
IEVAQTSEQL GFSAKDVSNQ AQQTLEDSHE QKDRTMMVVT AINEMGATVN EIASNAAQAA
VAAKDADTES NSGQVVVTRA RDTINQLSQD VEQVGEVIES LATHTKSIGG ILDVIRAISE
QTNLLALNAA IEAARAGEAG RGFAVVADEV RNLASRTAAS TNEVQGMIDK LQSEASRAVN
AMAQSRARSH EGVAAVDEAS QSLVGISDRI GLISDMNIQV AAATEEQSTV VEDINRNVTE
INEITQRTAS TAQAAAQASL ALNQLAHRLD TLVAKFKV