Gene Spea_3492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3492 
Symbol 
ID5663878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4268076 
End bp4269956 
Gene Length1881 bp 
Protein Length626 aa 
Translation table11 
GC content47% 
IMG OID641238148 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001503340 
Protein GI157963306 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTTA CAATTAAGCA AAAGATACAG CTCGCTGTCT TGCTGGTTAT CGTGACGATA 
ACAGCAGTTC TAGCCCTAAT CTCAACTAAG CAACTAAACC AACATACCGA ACACGCTATC
GCGACTCGCT TTGCACTTCA AGGTGAAGCA GTCAGTAACA ATATTTTTAG CTGGTTAGCA
GACAAAAAGC GCATTATCAG CGCCAATGAA GCTCCACTTC AAAATGGCTT AGATAATGCC
AAGGAACTCG AACTCAGCAT CCGGGCTGGC GGCTTTATCA ACCTGTATAT GGGCTTAGAT
AATGGCAAAG TGATCTCTGG TGACAAGAGC GTTGAGATCC CTGCAGATTT TGACGGTAGA
ACCCGGCCTT GGTACCGAGA TGCATTCAAT AGTCATGAGA TCATCACCAC CTTGCCTTAT
GTGGATATCT CTGGCGATAC CGTAGTGACC TTAGCTAAGC GTTTTAACGG GCAGTTTTCT
GGTGTATTAG CGGCAGATTT GAGCATTAGC TATATCACGC AGCAGATCGA CAACCTAAAT
ATTGCCAACT CAGGTTTTGC TTTCCTACTC GATGAAAACA ATAACATCCT AGCCTTTAGA
GATAGAAGCT ATGCTCAGCA AGACGCCAAG CGTTTATCAC AACAACTGAC TCAGTCAAAT
ATTCAAACCC TGCGTAATAG CGGCGAAATT AGCACCATAG AGTGGCAAGA TGGTCAGGAT
AAGCTAATCA GTTTAACGCA GCTTAAGGGG ACAAACTGGA CCTTAGGCTT AGTCGAAGAC
AAGAATCTTG CCTATCAGGC GATAGAACAG CAGATCCAAC AGTCTCTATT TGCAGTAACA
ATATTGGCCA TCATCATATT GCTGATTGCT TCTGTCGCCG TAAACTATCT GTTTAAGCCA
CTGCAACAAC TTAGCCTTGC TATTGAAGCC CTATCGAAAG GCGATGGTGA CTTAACCCAA
CGCTTTGCGG CAAATAGAGA AGATGAAATT GGTCAGTTAG AACGCCATAT GAACCGCTTC
CTAGCGAGTC TACAGCAGAT GATTAAGGCG ATATCAAATG ATACCGAGCA GTTGATCAAG
CAGATCCATG AGTCTTCAGA CATAGCAGCC AAAGCCAGTG ACGGCGTGAA TGGCCAGCAC
CAAGATGTGG ATCAGATAGC CACTGCTATC CATGAGATGT CGGCAACCGC GAGCGAAGTG
GCCAATCATG CCGAAATGAC TGCCAATGCT GCGCAAGTAT CAACCCAAGC CTGTATCGAA
GGCAATGACG TTATTATTAA GAGCAGCGAC TCTATCGAGC TGTTGTCAGA GCAACTTGGT
GATGCCTCGA AAGTGGTTTC TGCACTCGAA GAGAACGCCA CCGAGATCAA TAAGATCTTA
TCGACGATTC AAGCCATTGC CGAGCAGACA AACTTACTGG CACTTAACGC AGCTATTGAA
GCTGCCCGAG CCGGTGAGCA GGGACGAGGC TTTGCCGTAG TGGCCGATGA AGTACGAGTG
CTGAGTCATC GTACTCAAGA CTCTACCGAA GAGATCCGTG CGATGATCAC CACCTTGCAG
CAAAATAGCC AACAAGCGGT AGCATCTATG GCATCGAGTA CTGATATTGC CCACAGCAGT
GTCGAGTTCG CTAACCAAGC TAAGCAGAGC TTAGAGAGTA TTACCGATTC AATCACCGAG
ATCTCCGATA TGGCGACCCA AATCGCCAGT GCAGCAGAGG AGCAGCGCGC CGTTTCAGAG
GACATTAGCC GTAATACTCA AGCGATTAGC GATACATCCC ATCAACTGTC ATCTCAAACC
CAAGAGGTGA CCGACAATGC GGTGCAGATG CTACAGACCT CGAGTAGCTT AAGTGAACGG
GTTTCTCGTT TTAAGATCTA A
 
Protein sequence
MNLTIKQKIQ LAVLLVIVTI TAVLALISTK QLNQHTEHAI ATRFALQGEA VSNNIFSWLA 
DKKRIISANE APLQNGLDNA KELELSIRAG GFINLYMGLD NGKVISGDKS VEIPADFDGR
TRPWYRDAFN SHEIITTLPY VDISGDTVVT LAKRFNGQFS GVLAADLSIS YITQQIDNLN
IANSGFAFLL DENNNILAFR DRSYAQQDAK RLSQQLTQSN IQTLRNSGEI STIEWQDGQD
KLISLTQLKG TNWTLGLVED KNLAYQAIEQ QIQQSLFAVT ILAIIILLIA SVAVNYLFKP
LQQLSLAIEA LSKGDGDLTQ RFAANREDEI GQLERHMNRF LASLQQMIKA ISNDTEQLIK
QIHESSDIAA KASDGVNGQH QDVDQIATAI HEMSATASEV ANHAEMTANA AQVSTQACIE
GNDVIIKSSD SIELLSEQLG DASKVVSALE ENATEINKIL STIQAIAEQT NLLALNAAIE
AARAGEQGRG FAVVADEVRV LSHRTQDSTE EIRAMITTLQ QNSQQAVASM ASSTDIAHSS
VEFANQAKQS LESITDSITE ISDMATQIAS AAEEQRAVSE DISRNTQAIS DTSHQLSSQT
QEVTDNAVQM LQTSSSLSER VSRFKI