Gene Shewmr4_0271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0271 
Symbol 
ID4251167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp290711 
End bp292627 
Gene Length1917 bp 
Protein Length638 aa 
Translation table11 
GC content52% 
IMG OID638116826 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_732408 
Protein GI113968615 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.758035 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000678809 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATATTGA ATAACCTAAC TATTAAGCAG AAAATTCTGC TGACAGTGAC ATTTGCTGTG 
CTGCTGTCGA CCGTACTCGT GGGCGTCCTC AGTCAGCGTA GTGCAAAAAG CGTGGTACAG
CAGCGTATGC TCGGGTCGGA AATGCCCAGC CTAATGATGC AGATCCGCAA CAAGATTGAG
CTGGATATTT CGAGCTTAAT GAATGCCGCC GAACAACTCG CCAGCAGCCG TATGTTACTG
CAATGGCTTG AAAACGGTCG TCCACAGGAG CAAGAACCGC AAGTCGTTGC CCAGCTGAAG
GACATCACCC GCCAATATCA TTTGGCCCAA GCCTCCTACG CCGATAGACA AACCGCAGCC
TACTACACTC AGGATGGTTT TTTACGCGTA CTCACCCCAG CGCAGGATAG TTGGTTTTTT
GGTTATCGCG ACAGCGGCCA AGAGCGGATG CTTAACGTCT TTACCGAAGC CAATGGCGAG
GTAAAACTCT TTATCAACTA TCAGCAACCT AATGGCCGCG GACTCGTTGG CCTCGCCAAA
TCCCTCGATG ATATGGTGCG CCTATTGGGC TCCTTTAAGA TTGAAGAAAC CGGCTTTGTT
TACTTAGTCG ATGCCAAAGG CGAGATAAAA CTGCATCCCG ACGCCAGCCA AATTGGCAAG
AGCAGCCTCA AGAGCTTGTA CTCAGGCGCC AATATCAGTT CATTACTCAA TCGTAATGAC
TTCAACTTGA TCGATACCCA AATCCAAGGT GAAAACACCT TCGTAGCCAG CAGCTATATT
CCCTCCATGG ATTGGTATCT CGTGGCACAA GTGCCTGAAG CCGAAGTGTT CGCCCTGCTA
ACGGATGCCG CCTACCAGAT CTTAATTTGG ACCTTAATCA TTGCCGCGGG CTTTATCATG
CTGGCGATTG TGGTGGCAGG TTCTGTAAGC CGCCCTATCG CACAAGTCGC GGCAATGTTC
CGTGATATTG GCGAAGGTGA AGGCGATTTA CGCCAGCGCC TCCCCGTTAA AGGTGAAGAT
GAAATTGCCC AGCTGGCACA AGGGTTTAAT AGCTTTATCA GCAAAATCCA AGACTCAGTG
ATTGAGGTTG CACAGACCAG TGAACAGCTC GGCTTCTCGG CGAAGGATGT GTCTAATCAG
GCGCAGCAAA CCCTTGAAGA CAGCCATGAG CAAAAAGATC GCACTATGAT GGTCGTGACT
GCCATTAATG AGATGGGTGC CACGGTAAAT GAAATCGCCA GCAACGCCGC CCAAGCTGCT
GTTGCGGCAA AAGATGCCGA TACCGAATCC AATAGCGGCC AAGTGGTGGT GACCCGTGCT
CGGGATACCA TCAATCAACT CTCCCACGAT GTGGAACAAG TCGGCGAAGT AATTGAATCC
CTCGCGACTC ATACCAAGTC TATCGGCGGC ATTCTCGATG TGATCCGCGC GATTTCGGAG
CAAACCAACC TGTTAGCCCT AAACGCCGCG ATTGAAGCTG CACGTGCTGG TGAGGCGGGA
CGAGGCTTTG CCGTGGTAGC CGATGAAGTC CGTAATCTAG CATCGCGCAC CGCCGCATCG
ACCAACGAAG TCCAAGGTAT GATCGACAAG TTGCAATCCG AGGCCAGCCG AGCGGTGAAT
GCCATGGCCC AAAGCCGTGC GCGCTCCCAC GAAGGGGTGG CCGCCGTCGA TGAGGCCAGC
CAATCTCTGG TAGGCATTAG TGACCGTATT GGCCTGATCA GCGATATGAA CATTCAGGTG
GCTGCAGCGA CGGAAGAGCA ATCGACCGTG GTAGAAGATA TCAACCGCAA CGTGACCGAA
ATTAACGAGA TCACCCAGCG CACCGCCAGC ACGGCACAGG CTGCGGCACA GGCGAGCTTA
GCGCTAAACC AACTCGCCCA CCGCTTAGAC ACCTTAGTGG CGAAATTTAA GGTGTAA
 
Protein sequence
MILNNLTIKQ KILLTVTFAV LLSTVLVGVL SQRSAKSVVQ QRMLGSEMPS LMMQIRNKIE 
LDISSLMNAA EQLASSRMLL QWLENGRPQE QEPQVVAQLK DITRQYHLAQ ASYADRQTAA
YYTQDGFLRV LTPAQDSWFF GYRDSGQERM LNVFTEANGE VKLFINYQQP NGRGLVGLAK
SLDDMVRLLG SFKIEETGFV YLVDAKGEIK LHPDASQIGK SSLKSLYSGA NISSLLNRND
FNLIDTQIQG ENTFVASSYI PSMDWYLVAQ VPEAEVFALL TDAAYQILIW TLIIAAGFIM
LAIVVAGSVS RPIAQVAAMF RDIGEGEGDL RQRLPVKGED EIAQLAQGFN SFISKIQDSV
IEVAQTSEQL GFSAKDVSNQ AQQTLEDSHE QKDRTMMVVT AINEMGATVN EIASNAAQAA
VAAKDADTES NSGQVVVTRA RDTINQLSHD VEQVGEVIES LATHTKSIGG ILDVIRAISE
QTNLLALNAA IEAARAGEAG RGFAVVADEV RNLASRTAAS TNEVQGMIDK LQSEASRAVN
AMAQSRARSH EGVAAVDEAS QSLVGISDRI GLISDMNIQV AAATEEQSTV VEDINRNVTE
INEITQRTAS TAQAAAQASL ALNQLAHRLD TLVAKFKV