Gene PSPTO_1061 details

Gene Information

• Locus tag: PSPTO_1061
• ID: 1182695
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1156819
• End bp: 1158699
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637392440
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_790897
• Protein GI: 28868278
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.646209
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTTAA AGTTTCGTCA TAAAATCCTG CTGGCTGCGT CCGGCGTTGT GGTATTGGCG 
TTCGCGCTGT TCACGCTGTA CAACGATTAC CTGCAACGCA CCACCATCAA CCAGAACTTG 
GAGTCCTCGG TGGGGCAGGC AGGGCAACTG ACCGCCAGCA GTGTGCAGAA CTGGCTGAGC 
GGACGCATTC TGGTGCTGGA AAACCTCGCC CAGAACGTCG CGTTTCAGGG CGTGAATTCC 
GACCTGAGCG GGCTGGTATC GCAGTCTTCA CTGGTGTCGA CCTTTCAGTT CACCTACGTT 
GGTGACAGCA AAGGCATGTT CACTCAGCGG CCTAATGTCG ATATGCCGGC GGGTTACGAC 
CCACGCCAGC GGCCTTGGTA CAAGTCCACG GTCGACGCCG GCAAAACCAT TCTCAGTGCG 
CCGTATCTGG CTTCTGTCGG CGGCCTGGTG GTAACCATCG CCAGCCCGGT CAGGACCGCA 
GGTCAGGTGA GCGGTGTGGC GGGCGGTGAC CTGAGCCTGG ACACGCTGGT CAAGATTATC 
AATTCGGTCG AATTCGGCGG TATCGGTTAC GCCTTTCTGG TCAGTGGCGA CGGGCAGATC 
ATCGTCAGCC CGGACAAAGA CCAGGTCATG AAAAACCTCA AGGATATCTA CCCCGGCCAG 
ACCCTCAGCC TGGACGCGCG CTTGCGTGAG GTCAACCTCA ATGGTCAGCA AAGGCTGTTG 
TCGTTCACCC CGATTACCGG GCTGCCCTCG GCTGACTGGT ACATCGGCTT GTCGATCGAC 
AAGGACAAGG CCTACGCGCC GTTGAGCCAG TTCCGCAGCT CGGCGATGGT TGCTGTGTTG 
ATTGCCGTGA CAGTGATTGC GTTGTTGTTG AGCCTGCTGA TTCGCGCACT GATGCGCCCA 
CTGACCGACA TGGGCCGGGC AATGCAGGAC ATCGCCCAGG GCGAGGGTGA CTTGACCCGA 
CGCCTGAGTA TTCAGGGCAA GGACGAGTTC GCCGAACTGG GCGGCTCGTT CAACCAGTTC 
GTAGAGCGCG TGCATGCCTC CATTGCCGAG GTCTCCTCTG CCACGCTGCA GGTGCATGAC 
CTGTCGCAAC GAGTGGTCAA CTCTTCCAAC TCGTCAATCG TCGGCTTTGA CGAGCAGAGC 
GCCCGCACCA ACAGTGTGGC CGCTGCCATC AACGAGCTGG GTGCTGCGAC CCAGGAAATT 
GCCCGTAACG CATCGGACGC CTCGATTCAG GCCAGTGAAG CCCGAACTCA GGCTGAAGAC 
GGTCAGGTGG TGGTCGAAAA GACCATCAAC GCCATGAGCG AGTTGTCCGC CAAGATCAGC 
GATTCCTGCA CGCAGATCGA GCAGCTCAAT GCCAGCACCG ACAACATCGG CCATATCCTC 
GATGTCATCA AAGGCATTTC GCAACAAACC AACCTGCTGG CCCTCAACGC CGCCATCGAA 
GCTGCGCGTG CGGGTGAAGC GGGCCGTGGT TTTGCGGTAG TCGCCGATGA AGTGCGTAAC 
CTGGCTCATC GCACTCAGAC ATCCGCAGAC GAAATTCACA AGATGATCGG TGGTTTGCAG 
ACCGGCTCAC AGCACGCTGT GCTCAACATG AACGAAAGTC AGTTGTCTAG TCAGGAAAGT 
GTCGAAGTTG CCAATCAGGC GGGAAGTCGA CTGCGCGATG TAACGCGTCG TATTGGCGAA 
ATCGATGGCA TGAACCAGTC TGTCGCAGCC GCCACAGAAG AGCAGACCGC TGTTGTTGAA 
ACACTCAACA TTGATATCAA CCAGATCAAC ACACTGAATC AGCAAGGCGT CGCCAACCTT 
AATGAAACCC TCAATGATTG CGCTGCGCTT TCACAGCAAG CCGGACGTTT GAAACAATTG 
GTCGACAGTT TCAAGATCTG A 

 

Protein sequence

MTLKFRHKIL LAASGVVVLA FALFTLYNDY LQRTTINQNL ESSVGQAGQL TASSVQNWLS 
GRILVLENLA QNVAFQGVNS DLSGLVSQSS LVSTFQFTYV GDSKGMFTQR PNVDMPAGYD 
PRQRPWYKST VDAGKTILSA PYLASVGGLV VTIASPVRTA GQVSGVAGGD LSLDTLVKII 
NSVEFGGIGY AFLVSGDGQI IVSPDKDQVM KNLKDIYPGQ TLSLDARLRE VNLNGQQRLL 
SFTPITGLPS ADWYIGLSID KDKAYAPLSQ FRSSAMVAVL IAVTVIALLL SLLIRALMRP 
LTDMGRAMQD IAQGEGDLTR RLSIQGKDEF AELGGSFNQF VERVHASIAE VSSATLQVHD 
LSQRVVNSSN SSIVGFDEQS ARTNSVAAAI NELGAATQEI ARNASDASIQ ASEARTQAED 
GQVVVEKTIN AMSELSAKIS DSCTQIEQLN ASTDNIGHIL DVIKGISQQT NLLALNAAIE 
AARAGEAGRG FAVVADEVRN LAHRTQTSAD EIHKMIGGLQ TGSQHAVLNM NESQLSSQES 
VEVANQAGSR LRDVTRRIGE IDGMNQSVAA ATEEQTAVVE TLNIDINQIN TLNQQGVANL 
NETLNDCAAL SQQAGRLKQL VDSFKI