Gene VC0395_0173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0173 
Symbol 
ID5134345 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp204508 
End bp206427 
Gene Length1920 bp 
Protein Length639 aa 
Translation table11 
GC content51% 
IMG OID640530496 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001215014 
Protein GI147672108 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAATTTG ATATGAATGG AGTATTGTTC ATGAGATTGA GTTTAAAGAG AAAAATGGTT 
TTCTCTGTGG TCGTGGCGAT TGCCGTGACG GCGGCGGCGT TAGTCGCCGC AGGGTATCAG
ACCTTTGAAA AGGACAGTTG GCGGGCGATT GAAAGTGAAA GTCGCAATAC TTTACAAGCG
CATGCCAAAG GGATTGGTGA CTGGTTTTTG GGCAAGCAGC TCGCGCTTAA AGGGCTACGT
GAAGAAATTG AACGCAATCC GCAGTTAGAG TTAGTCCCTC ATTTAAGACA GACACTGCAG
TCTGGCTCTT TTGGATTGAG TTACTACGGT AATGAGCAGG GCGAAATGTT CCGTCAAGAT
CCGTCACTCA ATACCGCAGA TTATGACCCT CGAGTCCGTG GTTGGTACAA AGAAGCAAAA
GCAGCCGGCA AACCGATCAC GACCGAACCT TACGTGAGCG TCACCATGCA AACCTTAGTT
GTGACCTTGG CAGAGCCTGT TCGCTATCAA GGTCAATTGA TTGGGGTGGC CGCCTCCAAT
CTTGCGTTAG ATAAGCTGAT TAAAGATGTG TTAGCGATTG AAGTGCCCGG AAAAGGTTAC
GCGATTCTGG TGAACCAAAA AGGCAAAATC GTTGCTCACC CAACTCAAGA TTTGATCCTA
AAGCCGACGG AAGAGATGTC GGCTCAACTG ACTATTTCTA AGCTCAATAT CGCGGCCAAA
GACCATTCGC TCTTCCAACT GAGCATGGAC GGGCGAGATA AGGTCTTGAT GGCTGAGGAA
GTGGCGAATA CCGATTGGTT ACTGGTCATG GTGATGGATA AAGGGGTTCT GGAGCAGCCA
CTGAATGACA TGTTGATGGT GCAGATCGGG ATTGGACTAG GTATCTTGCT TGTGATGGCA
CTGCTTACGT CTTGGTTTGT GGCTCGTCAG CTTAATGAGC TCGGTAATAT CGCTAATGCT
CTGGCGGATA TCGCCGAAGG GGATGGCGAT TTGACTCGTC GTTTGGATGT TCGCAGCCAA
GATGAAGTCG GTTTGCTGGC GGATAAGTTC AACAAGTTCG TCGATCGCTT GCATCAAATG
GTAAAAAATG TGCGTGAAGT GTCGGTGGCG CTGACTCAAG GGGCTGACCA CGCGGCCGCC
TCGGCGACTC AAGCCAGCAA ACGCATTCGC ACCCAGCAAG ATGAAATCAC TATGGTCGCG
ACAGCGGTGA CGGAAATGGC GTCGGCGACA GCTGAAATCG CCAGCAATGC CGAAAATACC
GCGAAGAACG CCACTCAATC GGTGCAATTG GGCGAAGATG GCTTTGCGCA AATGCAACAA
AGTAAACAGT CGATTGACCA GCTTGCTCAA GAGTTAACTG GCGCGGTGCG TATCATCAGC
GAGCTTGAAG TGCATGCCAA TGAAATTTCC ACCATCTTGT CGACCATTCG TGGCATCGCT
GAACAGACCA ATTTGCTGGC ATTGAACGCC GCGATTGAAG CGGCGCGTGC CGGAGAGCAA
GGACGCGGTT TTGCGGTGGT TGCGGATGAA GTTCGTGTGC TGTCACAGCG CACCCACGCA
TCGACGGAAG AGATCCAGAC TAAGATTGCT GGCTTGCAGA AAGTCACCAC CACTGCGGTA
TCGGTAATGA CCGAAAGCCA TAAGTTGGTG GAAACCAGTG TCGCGGATGT CAACCAAACC
GGAGCAAGCT TGCAAGCGAT CAGTGAAGCG ATTCAGCAGA TCAGCGATAT GGCGACGCAA
ATCGCTTCAG CGGCGGAAGA GCAATCGTTA GTGACGGCGG ATATCAATGT GAATACTGAA
TCTGTCCGTG AAGTGAGCGA CCAGTTAGCC GAAGAAGCTC AGCAATCCGT GCAGCAGGCG
AAATCACTGC ATGCGATGGC ACAAGAGCTG AATAAGGAGA TTTCACGCTT TAAGCTATAA
 
Protein sequence
MQFDMNGVLF MRLSLKRKMV FSVVVAIAVT AAALVAAGYQ TFEKDSWRAI ESESRNTLQA 
HAKGIGDWFL GKQLALKGLR EEIERNPQLE LVPHLRQTLQ SGSFGLSYYG NEQGEMFRQD
PSLNTADYDP RVRGWYKEAK AAGKPITTEP YVSVTMQTLV VTLAEPVRYQ GQLIGVAASN
LALDKLIKDV LAIEVPGKGY AILVNQKGKI VAHPTQDLIL KPTEEMSAQL TISKLNIAAK
DHSLFQLSMD GRDKVLMAEE VANTDWLLVM VMDKGVLEQP LNDMLMVQIG IGLGILLVMA
LLTSWFVARQ LNELGNIANA LADIAEGDGD LTRRLDVRSQ DEVGLLADKF NKFVDRLHQM
VKNVREVSVA LTQGADHAAA SATQASKRIR TQQDEITMVA TAVTEMASAT AEIASNAENT
AKNATQSVQL GEDGFAQMQQ SKQSIDQLAQ ELTGAVRIIS ELEVHANEIS TILSTIRGIA
EQTNLLALNA AIEAARAGEQ GRGFAVVADE VRVLSQRTHA STEEIQTKIA GLQKVTTTAV
SVMTESHKLV ETSVADVNQT GASLQAISEA IQQISDMATQ IASAAEEQSL VTADINVNTE
SVREVSDQLA EEAQQSVQQA KSLHAMAQEL NKEISRFKL