Gene Shewmr4_3042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3042 
Symbol 
ID4253613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3638584 
End bp3640476 
Gene Length1893 bp 
Protein Length630 aa 
Translation table11 
GC content50% 
IMG OID638119684 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_735170 
Protein GI113971377 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.397129 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGATCAA CACTCAAAAC CCGCCTACTC TTTAGTAGTC TCTTCGCCGT TCTCATTACT 
GTCGCAGTGC TGGTAAGCAT ATCAAGCTAT TTCATCCGCA ATAATGCCTT AGAAAATACT
CAACATGAAA TTGATCAACT GGCGAATACC TTTGCCGAAG GTATTGGCCT GTGGATGCAA
GATCGCAAAA TGGCGATCAC CAGTCTTAAA AAGACCATAG AAGCCGATCC CAATGTGCAA
ATCACGCCCT ATTTATTACA AGCCCACAAT GGTATGGGGT TTGCGCTGAC TTATTTTGGT
GATGAGCAGG GAAACATGTA CCGCCAAGAT CCCGCGCTCA ATACCGCTAA CTATGATCCC
AGAGTCCGTC CTTGGTATAT GGATGCCAAA GCCGCTAATG CGATGGTAAT GACTGCGCCC
TATGTGAGCG CCACCTTAAA AAAACAAGTG GTGACCATTG CCGAGCCCGT CATGGTATCG
GGTAGTTTGT TCGGGGTTGC CGCAGCAAAC CTCACCATAG ATCAACTCAC CGATGCGGTG
CAGCGCCTTA AAGTGCCAGG TAAAGGCTAT ACCCTCATGG TGGACAAGAC TGGGCTTATC
ATCAGCCACC CCAATAACCA GCTTAATAAT CAACAACTAA ATAAAATTGA TAGCAATTTT
ACCCCCAGCT GGTTATCCCA ACGTGCAAAT GCCAATACCT TAGAAGAACG CGAGCTCGAT
GGCGAAACTC AACTCATCTA TGTTGCAGCA GTGCCATCTA CCGACTGGGA ACTGATTTTC
GTGATGAACA AGGAGGAAAT CATGTCGCAG GCCACCACTC TTGCCTGGTG GATGTCCGCT
GTTGGAGCTG GCTTACTGGT CATCTTCGGC TTGGTCCTAG TGGCCATCTT TAAAATTCAA
TTTAAAGACT TAGAACGCGT TGCCTTGGCA CTTAATGATA TTGCCGAAGG GGATGGCGAC
CTGACGGTTA GGATCCACAC CGCCAACAGC CACGACGAAA TTGGTATCTT GGCCTCAGGC
TTTAACCGCT TCGTCGAACG ACTGCATGGC ATGATCTCCA GAATGCACCA GATCGCAGGC
CAACTGGAAT ATCAAGCCCA GGGCAGCAGT GCATCGGCCA CGGATAATAG CCAGCGCATC
GCCGTGCAGC AGGACGAAGT GACCATGGTG GCGACCGCAG TCACTGAGAT GGCGAGCGCC
ACCGAAGAGA TTGCCAGCAA CGCCGAGCAC ACAGCACAAA CGGCGCAAGA TGCAGTTGGA
CTATCTGACC ATGGTCAAAA ACAAGTGATG CAGAGTCAGC AATCTATTCG TAACTTGGCG
AACGAAGTGG ATACTGCTGG CCGTATTATC AGTGAGCTTA ATGAACACTC ACAAAAGATT
AATAGCATCC TGCTCACCAT CAGTGGCATT GCCGAACAAA CCAACTTACT GGCGTTGAAC
GCTGCGATTG AAGCCGCCCG CGCCGGTGAA CAAGGTCGCG GCTTTGCCGT GGTGGCCGAC
GAAGTGCGCG TGTTGTCGCA GCGTACTCAC TCATCGACTC AAGAAATTCA AGCCATGATC
GAGACCCTAC AACAAACTGC GGCTAAGGCG GTTAAATCTA TGACCCAAAG TCACGATATG
GCTGAAACCA GTGTCGCCGA CGCCAACTCG GCCAGTGAGA GCCTGCTACA GATCAGCAAA
GCCATTAATG AGATCTCGGA TATGGCGAGC CAAATTGCCA CCGCCGCAGA GGAGCAAACT
TCGGTCACCA GCGAAATTAA CCGTAATACC GAGTCGATTC GTGAAGTTTC TGAAAACCTC
TCCATAGAAG CACAAAGCTC GATGGTACAG GCACAAGAAT TAGCTCACTT AGCCGCCTCG
CTGCAGCAGG AAGTTGGTCG CTTTAAGCTA TAA
 
Protein sequence
MRSTLKTRLL FSSLFAVLIT VAVLVSISSY FIRNNALENT QHEIDQLANT FAEGIGLWMQ 
DRKMAITSLK KTIEADPNVQ ITPYLLQAHN GMGFALTYFG DEQGNMYRQD PALNTANYDP
RVRPWYMDAK AANAMVMTAP YVSATLKKQV VTIAEPVMVS GSLFGVAAAN LTIDQLTDAV
QRLKVPGKGY TLMVDKTGLI ISHPNNQLNN QQLNKIDSNF TPSWLSQRAN ANTLEERELD
GETQLIYVAA VPSTDWELIF VMNKEEIMSQ ATTLAWWMSA VGAGLLVIFG LVLVAIFKIQ
FKDLERVALA LNDIAEGDGD LTVRIHTANS HDEIGILASG FNRFVERLHG MISRMHQIAG
QLEYQAQGSS ASATDNSQRI AVQQDEVTMV ATAVTEMASA TEEIASNAEH TAQTAQDAVG
LSDHGQKQVM QSQQSIRNLA NEVDTAGRII SELNEHSQKI NSILLTISGI AEQTNLLALN
AAIEAARAGE QGRGFAVVAD EVRVLSQRTH SSTQEIQAMI ETLQQTAAKA VKSMTQSHDM
AETSVADANS ASESLLQISK AINEISDMAS QIATAAEEQT SVTSEINRNT ESIREVSENL
SIEAQSSMVQ AQELAHLAAS LQQEVGRFKL