Gene PputGB1_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_1880 
Symbol 
ID5869665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp2116162 
End bp2118048 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content63% 
IMG OID641547002 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001668119 
Protein GI167032888 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.454316 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGA AATTTCGCCA CAAGATCCTG CTCAGCGCCT GCGGCGTCGT GGTCCTGGCA 
TTTGCCCTGT TCACGCTTTA CAACGACTAC CTGCAACGCA ACACCATCCG CCAGAACATC
GAAGCCTCGG TACAGCAGTC CGGTGCACTG ACTGCCAGCA GCGTGCAGAA CTGGATGAGC
GGGCGCATCC TGGTGCTGGA AAACCTGGCC CAGGACATCG GCCAGCAAGG CGCCGGCGAC
ACCCTGGCCG GGCTGATCGA GCAGCCGTCC TACACGCGTA ATTTCCTGTT CACCTACCTG
GGCCAGGCCA ACGGCGTATT CACCCAGCGC CCGGATACCC AGATGCCCGC CGGTTACGAC
CCGCGCCAGC GCCCCTGGTA TGGCGCCGCC GCCAGCGCCG GGCAAACCGT GCTGACCGCC
CCATACCAGG GTGCGGTCGG TGGCCTGATG GTAACCATCG CCACCCCGGT GAAGAGCAAG
AGCAATGGCG AACTGATCGG CGTGGTCGGC GGTGACGTGA CCCTCGATAC CCTGGTAGAA
ATCATCAACT CGGTCGACTT CGGTGGCATC GGTCACGCCT TCCTGGCCGA CGCCAACGGC
CAGGTGATCG TCAGCCCCAA CAAAGACCAG GTGATGAAGA ACCTCAAGGA CATCTACCCA
GGCAGCAACC TGCGGGTTGC CGCCGGCATG CAGGATGTCA CCCTCAACGG CCAGGACCGC
ATCATTTCGT TCGCCCCGGT GAACGGCCTG CCGTCGGCGC AGTGGTACAT CGGCCTGTCC
ATCGACAAGG ACAAAGCCTA CGCCGCGCTC AGCCAGTTCC GCACCTCGGC GATCATTGCC
ATGCTGATTG CCGTGGCCGC CATTGCCGGC CTGCTCGGCC TGCTGATCCC TGTGCTGATG
AGCCCGCTGA CCACCATGGG CCGCGCCATG CGTGACATCG CCGAAGGCGA AGGTGACCTT
ACCCGCCGCC TGGCCGTGCA GAACAAGGAT GAGTTCGGCG AACTGGCCAC CTCGTTCAAC
CGCTTTGTCG AGCGTATCCA TGCCTCGATC AGCGAAGTGT CCTCGGCCAC CCGCCTGGTG
CATGACCTGT CGGAGAAAGT GGTCAGTGCG TCCAATGCGT CTATCAGCGG CTCTGAAGAA
CAGAGCATGC GCACCAACAG TGTGGCTGCG GCCATCAACG AACTGGGCGC AGCCACCCAG
GAAATCGCCC GCAATGCCGC CGATGCTTCG CAACATGCCA GCGGTGCCAG CGAACAGGCG
CACGGTGGCC GTGAAGTGGT TGAAGAAGCC ATCAGCGCCA TGACGGCCCT GTCGCAGCGC
ATCAGCGAGT CGTGCGCGCA GATCGAAACG CTCAACGCCA GCACCGACGA AATCGGCAAG
ATACTCGACG TGATCAAGGG CATCTCGCAG CAGACCAACC TGCTGGCGCT GAACGCCGCC
ATCGAAGCGG CCCGTGCCGG TGAAGCCGGC CGTGGTTTTG CCGTGGTGGC CGACGAAGTG
CGTAACCTGG CGCACCGGAC CCAGGAATCG GCGGAAGAAA TCCACCGCAT GATCACCAGC
CTGCAGGTGG GCTCGCGCGA AGCGGTGCAC ACCATGAACA CCAGCCAGGT TTCCAGCGAG
CAGACCGTGC AGGTGGCCAA CCAGGCCGGC GAACGCCTGG CCAGCGTGAC CCAGCGTATT
GGCGAAATCG ATGGCATGAA CCAGTCGGTG GCCACGGCTA CTGAAGAGCA GACCGCCGTG
GTCGAGAGCC TTAACCTGGA CATTACCCAG ATCAACGCCC TGAACCAGCA AGGGGTGGAG
AACCTCAACG ACACCCTGCG CCATTGCGAT CAGCTGGCCC AGCAGGCCGG GCGCTTGAAA
CAGCTGGTAG GCAGCTTCAG GATCTAA
 
Protein sequence
MNLKFRHKIL LSACGVVVLA FALFTLYNDY LQRNTIRQNI EASVQQSGAL TASSVQNWMS 
GRILVLENLA QDIGQQGAGD TLAGLIEQPS YTRNFLFTYL GQANGVFTQR PDTQMPAGYD
PRQRPWYGAA ASAGQTVLTA PYQGAVGGLM VTIATPVKSK SNGELIGVVG GDVTLDTLVE
IINSVDFGGI GHAFLADANG QVIVSPNKDQ VMKNLKDIYP GSNLRVAAGM QDVTLNGQDR
IISFAPVNGL PSAQWYIGLS IDKDKAYAAL SQFRTSAIIA MLIAVAAIAG LLGLLIPVLM
SPLTTMGRAM RDIAEGEGDL TRRLAVQNKD EFGELATSFN RFVERIHASI SEVSSATRLV
HDLSEKVVSA SNASISGSEE QSMRTNSVAA AINELGAATQ EIARNAADAS QHASGASEQA
HGGREVVEEA ISAMTALSQR ISESCAQIET LNASTDEIGK ILDVIKGISQ QTNLLALNAA
IEAARAGEAG RGFAVVADEV RNLAHRTQES AEEIHRMITS LQVGSREAVH TMNTSQVSSE
QTVQVANQAG ERLASVTQRI GEIDGMNQSV ATATEEQTAV VESLNLDITQ INALNQQGVE
NLNDTLRHCD QLAQQAGRLK QLVGSFRI