More than 300 homologs were found in PanDaTox collection
for query gene Pput_3489 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.51 
 
 
630 aa  705    Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_002947  PP_1371  methyl-accepting chemotaxis transducer  59.5 
 
 
624 aa  709    Pseudomonas putida KT2440  Bacteria  normal  normal  0.318672 
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  99.68 
 
 
643 aa  1266    Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  98.89 
 
 
628 aa  1258    Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  63.38 
 
 
629 aa  815    Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  100 
 
 
628 aa  1273    Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  71.82 
 
 
626 aa  901    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  55.64 
 
 
629 aa  668    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0906  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  71.5 
 
 
626 aa  900    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  54.69 
 
 
629 aa  651    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_007005  Psyr_3534  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  56.85 
 
 
629 aa  683    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.667463  normal  0.0882884 
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  79.14 
 
 
626 aa  1019    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  58.82 
 
 
630 aa  718    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4443  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.87 
 
 
624 aa  701    Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000033578 
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  60.19 
 
 
629 aa  737    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  64.49 
 
 
625 aa  803    Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  62.58 
 
 
629 aa  775    Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  93.47 
 
 
626 aa  1160    Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_009512  Pput_4352  methyl-accepting chemotaxis sensory transducer  59.5 
 
 
624 aa  710    Pseudomonas putida F1  Bacteria  normal  normal  0.0132701 
 
 
-
 
NC_010501  PputW619_1011  methyl-accepting chemotaxis sensory transducer with Cache sensor  60.99 
 
 
624 aa  717    Pseudomonas putida W619  Bacteria  normal  0.752503  hitchhiker  0.0000000000251926 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  58.32 
 
 
632 aa  721    Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  58.32 
 
 
632 aa  722    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  62.74 
 
 
629 aa  788    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  63.22 
 
 
629 aa  814    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  33.55 
 
 
626 aa  357  2.9999999999999997e-97  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  33.6 
 
 
627 aa  345  1e-93  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_011989  Avi_0988  methyl-accepting chemotaxis protein  32.57 
 
 
695 aa  336  5.999999999999999e-91  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2364  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
622 aa  330  6e-89  Shewanella baltica OS155  Bacteria  normal  0.493821  n/a   
 
 
-
 
NC_009438  Sputcn32_2121  methyl-accepting chemotaxis sensory transducer  36.05 
 
 
622 aa  328  1.0000000000000001e-88  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  33.6 
 
 
623 aa  325  2e-87  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  34.21 
 
 
623 aa  322  1.9999999999999998e-86  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0316  methyl-accepting chemotaxis protein  34.1 
 
 
652 aa  313  5.999999999999999e-84  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  33.7 
 
 
630 aa  311  2.9999999999999997e-83  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  33.85 
 
 
630 aa  310  5.9999999999999995e-83  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009457  VC0395_A1741  methyl-accepting chemotaxis protein  35.1 
 
 
623 aa  308  2.0000000000000002e-82  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.7 
 
 
630 aa  308  2.0000000000000002e-82  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  33.7 
 
 
630 aa  307  4.0000000000000004e-82  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  32.91 
 
 
622 aa  306  5.0000000000000004e-82  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  33.08 
 
 
630 aa  297  4e-79  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  35.34 
 
 
627 aa  295  1e-78  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
623 aa  295  1e-78  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  33.65 
 
 
630 aa  294  3e-78  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.55 
 
 
626 aa  291  3e-77  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  32.46 
 
 
633 aa  288  1e-76  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  33.08 
 
 
630 aa  288  1e-76  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  32.76 
 
 
630 aa  288  2e-76  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  34.17 
 
 
627 aa  288  2e-76  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  32.61 
 
 
638 aa  288  2e-76  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_009654  Mmwyl1_1383  methyl-accepting chemotaxis sensory transducer  33.39 
 
 
636 aa  288  2e-76  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00353653  normal  0.775857 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  33.02 
 
 
630 aa  288  2.9999999999999996e-76  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  32.6 
 
 
623 aa  288  2.9999999999999996e-76  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  31.97 
 
 
631 aa  287  4e-76  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.99 
 
 
626 aa  287  4e-76  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0193  methyl-accepting chemotaxis sensory transducer  33.96 
 
 
623 aa  285  1.0000000000000001e-75  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4557  methyl-accepting chemotaxis protein  33.6 
 
 
623 aa  285  2.0000000000000002e-75  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.02 
 
 
623 aa  285  2.0000000000000002e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_011312  VSAL_I0799  methyl-accepting chemotaxis protein  31.21 
 
 
624 aa  285  2.0000000000000002e-75  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3752  methyl-accepting chemotaxis sensory transducer  32.44 
 
 
623 aa  285  2.0000000000000002e-75  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_4274  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.33 
 
 
623 aa  284  3.0000000000000004e-75  Shewanella baltica OS195  Bacteria  normal  normal  0.179842 
 
 
-
 
NC_011663  Sbal223_0194  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.33 
 
 
623 aa  284  3.0000000000000004e-75  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0194  methyl-accepting chemotaxis sensory transducer  34.18 
 
 
623 aa  284  3.0000000000000004e-75  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4141  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
623 aa  284  3.0000000000000004e-75  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
638 aa  283  6.000000000000001e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_008577  Shewana3_0272  methyl-accepting chemotaxis sensory transducer  34.15 
 
 
638 aa  283  9e-75  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00090491  hitchhiker  0.000000349734 
 
 
-
 
NC_008322  Shewmr7_3750  methyl-accepting chemotaxis sensory transducer  33.99 
 
 
638 aa  282  1e-74  Shewanella sp. MR-7  Bacteria  normal  0.666265  normal  0.186245 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  32.71 
 
 
639 aa  282  1e-74  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  34.15 
 
 
642 aa  281  2e-74  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_0271  methyl-accepting chemotaxis sensory transducer  33.84 
 
 
638 aa  281  3e-74  Shewanella sp. MR-4  Bacteria  normal  0.758035  hitchhiker  0.0000678809 
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  36.12 
 
 
638 aa  279  1e-73  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0323  methyl-accepting chemotaxis sensory transducer  32.99 
 
 
623 aa  278  2e-73  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  35.21 
 
 
638 aa  277  4e-73  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  33.39 
 
 
626 aa  276  9e-73  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_3017  methyl-accepting chemotaxis sensory transducer  31.37 
 
 
630 aa  276  1.0000000000000001e-72  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0525  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.96 
 
 
632 aa  274  4.0000000000000004e-72  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009901  Spea_1629  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.61 
 
 
623 aa  274  4.0000000000000004e-72  Shewanella pealeana ATCC 700345  Bacteria  normal  0.438395  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  35.91 
 
 
636 aa  274  4.0000000000000004e-72  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4247  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.79 
 
 
599 aa  273  6e-72  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0387  methyl-accepting chemotaxis sensory transducer  34.49 
 
 
638 aa  272  1e-71  Shewanella putrefaciens CN-32  Bacteria  normal  0.408395  n/a   
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  33.33 
 
 
636 aa  271  2e-71  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_0279  methyl-accepting chemotaxis sensory transducer  33.44 
 
 
638 aa  271  2.9999999999999997e-71  Shewanella baltica OS223  Bacteria  normal  0.983838  normal 
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
641 aa  271  2.9999999999999997e-71  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
638 aa  271  2.9999999999999997e-71  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  33.23 
 
 
638 aa  271  2.9999999999999997e-71  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  37.31 
 
 
639 aa  270  5e-71  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_007908  Rfer_3449  methyl-accepting chemotaxis sensory transducer  32.3 
 
 
632 aa  270  5.9999999999999995e-71  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1642  methyl-accepting chemotaxis sensory transducer  30.02 
 
 
599 aa  270  7e-71  Burkholderia sp. 383  Bacteria  normal  normal  0.255489 
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.17 
 
 
627 aa  269  1e-70  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  34.46 
 
 
713 aa  263  4.999999999999999e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  42.44 
 
 
634 aa  263  6e-69  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008061  Bcen_3992  methyl-accepting chemotaxis sensory transducer  29.55 
 
 
599 aa  261  3e-68  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4375  methyl-accepting chemotaxis sensory transducer  29.55 
 
 
599 aa  261  3e-68  Burkholderia cenocepacia HI2424  Bacteria  normal  0.480091  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  36.95 
 
 
559 aa  260  4e-68  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2088  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.22 
 
 
617 aa  260  5.0000000000000005e-68  Acidovorax ebreus TPSY  Bacteria  normal  0.258516  n/a   
 
 
-
 
NC_010515  Bcenmc03_5980  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.7 
 
 
599 aa  259  8e-68  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  33.16 
 
 
716 aa  259  1e-67  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_013457  VEA_001273  methyl-accepting chemotaxis protein  34.63 
 
 
638 aa  259  1e-67  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  33.33 
 
 
712 aa  258  3e-67  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  33.33 
 
 
712 aa  258  3e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009636  Smed_0489  methyl-accepting chemotaxis sensory transducer  39.83 
 
 
698 aa  256  1.0000000000000001e-66  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.000832175  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  40.86 
 
 
634 aa  255  2.0000000000000002e-66  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
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