Gene Psyr_3534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3534 
Symbol 
ID3369061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4211791 
End bp4213680 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content59% 
IMG OID637653885 
Producthistidine kinase, HAMP region:Cache: chemotaxis sensory transducer 
Protein accessionYP_236604 
Protein GI66046763 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.667463 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0882884 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAAT CTTTAAAATT CAGCCATAAA ATTCTCTTGG CGGCGTCCCT TGTGGTGATC 
GCCGCATTCA CGCTATTCAC GTTCTATAAC GACTATCTGC AGCGCAATGC GTTGCACGTG
CAGCTCAAGG AGAACCTTAA CCAGACGAGC GAAAGTACCG CCGGCAATAT CCGTAACTGG
CTTTCCGGGC GAATTCTTCT GGTAGAGAAC CTGGCGGAAA ACGCGTCTTC GCCTCAGTCC
CCGCAAGAGC AGAATCGGGT ACTCGGGCAA CCCACGCTGA TCGCCACCTT CATGAGCATT
TATCAGGGCA GAAGCGATGG CTCCTTCGTC ACCCAGCCGC CTGATGACAT GTCGGCCGAC
TACGACCCAA GAACCCGACC GTGGTATGTC GATGCCCTTC GCGCCGGCAA AACCATCCTG
ACCGAGCCGT ATCTGGACGC CGTGACCAAG GGCCTGGTCG TGACCCTTGC CACACCGATC
AAGGGAGACT CCGGCGTGTC CGGTGTAATT GGCGGCGACC TGAGCCTGGA AATCCTGGTG
AAGATGATCA GTTCGCTGCG GATGCACGGC GACGGATACG CGTTTCTGGT CGACGCGAAT
GGCCGCATCC TGGTCCATCC GGACACCTCA CTGGTGATGA AGACGCTGGC CGAAGTCTAC
CCGGCGAACA CGCCCAGGCT GTCGCAAGAC CTGAGTGAAA GCGAGTATGC CGGCAAGACC
CAGATCCTGA CCTTCGCTCA CGTGGACGGC CTGCCCTCGG TCAACTGGTA CGTCGGCGTA
GCAATGGATA AAGACATCGC CTACGCGGCC CTGGGCGAGT TCAGAAACTC GGCCATCGTG
GCCACTGTGA TTGCTGTGGT GCTGATCATC CTGCTGCTGG GCATGCTCCT GAGTGTCCTG
CTGCGCCCAC TGAACCTGAT GGGCCGCGCC ATGCACGATA TCGCTGCTGG CGAAGGTGAC
CTGACCAAGC GCCTGGTCAT CGAGAGCCAG GACGAGTTCG GGCATCTGGG CAATGGTTTC
AACCTCTTTG TAGAGCGAAT CCATGACTCG ATGCGTGAAG TCGCCTCCTC CACCGTGCAG
CTCAATGAAG TTGCCCTGCG GGTACTGAAT GCATCCAACT CGTCGATGCT TAACTCCGAT
CAACAGTCAC ACCGCACCAA CAGCGTCGCC GCAGCCATCA ATGAGCTGGG CGCCGCAACG
CAGGAGATCG CCCAGAATGC CGCGCGCGCC TCGGGTCACT CCAGCGATGC ACGAACGCTG
GCGTCGGACG GGCAGGACGT GGTCGGGCAG AACATCGAGG CCATGAGCCG TCTTTCCAAG
CGCATCAGCA GCGCAAGCGG GCAGATCGAA ACGCTGAACA CCAAGACAGC CAACATCGGC
CAGATCCTCG ACGTGATTAC CGGCATCTCG CAGCAGACCA ATCTACTGGC CCTCAATGCG
GCCATCGAGG CCGCGCGTGC AGGTGAAGCC GGCAGAGGGT TTGCCGTGGT TGCTGACGAA
GTCCGCAGCC TGGCGCACCG AACGCAGGAA TCGGCGAGTC AGGTGCAGGA GATGATCGAG
CAACTGCAAT CCGGTGCCCG TGAAGCCGTG TCGATCATGA ACGACAGCCA GCGCGAGAGC
GTTGAAACGG TCGGCATTGC CAACAAGGCC GTTGCAAGCC TTGAGCACGT GACCGAACGC
ATTGGCGAAA TCGATGGCAT GAACCAGTCG GTCGCTGCCG CCACCGAAGA GCAGACCGCC
GTCGTGGAAG CGATCAACGT GGACATCACC GAGATCAATA CGCTGAACCA GCAAGGCGTA
GAGAACCTGA ACGCGACCCT GCGCGCGTGC ACTGACCTTG AACAGCAGTC CACCCGACTG
ACGCAGTTGG TGGGCAGTTT CAGGATCTGA
 
Protein sequence
MRKSLKFSHK ILLAASLVVI AAFTLFTFYN DYLQRNALHV QLKENLNQTS ESTAGNIRNW 
LSGRILLVEN LAENASSPQS PQEQNRVLGQ PTLIATFMSI YQGRSDGSFV TQPPDDMSAD
YDPRTRPWYV DALRAGKTIL TEPYLDAVTK GLVVTLATPI KGDSGVSGVI GGDLSLEILV
KMISSLRMHG DGYAFLVDAN GRILVHPDTS LVMKTLAEVY PANTPRLSQD LSESEYAGKT
QILTFAHVDG LPSVNWYVGV AMDKDIAYAA LGEFRNSAIV ATVIAVVLII LLLGMLLSVL
LRPLNLMGRA MHDIAAGEGD LTKRLVIESQ DEFGHLGNGF NLFVERIHDS MREVASSTVQ
LNEVALRVLN ASNSSMLNSD QQSHRTNSVA AAINELGAAT QEIAQNAARA SGHSSDARTL
ASDGQDVVGQ NIEAMSRLSK RISSASGQIE TLNTKTANIG QILDVITGIS QQTNLLALNA
AIEAARAGEA GRGFAVVADE VRSLAHRTQE SASQVQEMIE QLQSGAREAV SIMNDSQRES
VETVGIANKA VASLEHVTER IGEIDGMNQS VAAATEEQTA VVEAINVDIT EINTLNQQGV
ENLNATLRAC TDLEQQSTRL TQLVGSFRI