Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3534 |
Symbol | |
ID | 3369061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4211791 |
End bp | 4213680 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637653885 |
Product | histidine kinase, HAMP region:Cache: chemotaxis sensory transducer |
Protein accession | YP_236604 |
Protein GI | 66046763 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.667463 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0882884 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAAAT CTTTAAAATT CAGCCATAAA ATTCTCTTGG CGGCGTCCCT TGTGGTGATC GCCGCATTCA CGCTATTCAC GTTCTATAAC GACTATCTGC AGCGCAATGC GTTGCACGTG CAGCTCAAGG AGAACCTTAA CCAGACGAGC GAAAGTACCG CCGGCAATAT CCGTAACTGG CTTTCCGGGC GAATTCTTCT GGTAGAGAAC CTGGCGGAAA ACGCGTCTTC GCCTCAGTCC CCGCAAGAGC AGAATCGGGT ACTCGGGCAA CCCACGCTGA TCGCCACCTT CATGAGCATT TATCAGGGCA GAAGCGATGG CTCCTTCGTC ACCCAGCCGC CTGATGACAT GTCGGCCGAC TACGACCCAA GAACCCGACC GTGGTATGTC GATGCCCTTC GCGCCGGCAA AACCATCCTG ACCGAGCCGT ATCTGGACGC CGTGACCAAG GGCCTGGTCG TGACCCTTGC CACACCGATC AAGGGAGACT CCGGCGTGTC CGGTGTAATT GGCGGCGACC TGAGCCTGGA AATCCTGGTG AAGATGATCA GTTCGCTGCG GATGCACGGC GACGGATACG CGTTTCTGGT CGACGCGAAT GGCCGCATCC TGGTCCATCC GGACACCTCA CTGGTGATGA AGACGCTGGC CGAAGTCTAC CCGGCGAACA CGCCCAGGCT GTCGCAAGAC CTGAGTGAAA GCGAGTATGC CGGCAAGACC CAGATCCTGA CCTTCGCTCA CGTGGACGGC CTGCCCTCGG TCAACTGGTA CGTCGGCGTA GCAATGGATA AAGACATCGC CTACGCGGCC CTGGGCGAGT TCAGAAACTC GGCCATCGTG GCCACTGTGA TTGCTGTGGT GCTGATCATC CTGCTGCTGG GCATGCTCCT GAGTGTCCTG CTGCGCCCAC TGAACCTGAT GGGCCGCGCC ATGCACGATA TCGCTGCTGG CGAAGGTGAC CTGACCAAGC GCCTGGTCAT CGAGAGCCAG GACGAGTTCG GGCATCTGGG CAATGGTTTC AACCTCTTTG TAGAGCGAAT CCATGACTCG ATGCGTGAAG TCGCCTCCTC CACCGTGCAG CTCAATGAAG TTGCCCTGCG GGTACTGAAT GCATCCAACT CGTCGATGCT TAACTCCGAT CAACAGTCAC ACCGCACCAA CAGCGTCGCC GCAGCCATCA ATGAGCTGGG CGCCGCAACG CAGGAGATCG CCCAGAATGC CGCGCGCGCC TCGGGTCACT CCAGCGATGC ACGAACGCTG GCGTCGGACG GGCAGGACGT GGTCGGGCAG AACATCGAGG CCATGAGCCG TCTTTCCAAG CGCATCAGCA GCGCAAGCGG GCAGATCGAA ACGCTGAACA CCAAGACAGC CAACATCGGC CAGATCCTCG ACGTGATTAC CGGCATCTCG CAGCAGACCA ATCTACTGGC CCTCAATGCG GCCATCGAGG CCGCGCGTGC AGGTGAAGCC GGCAGAGGGT TTGCCGTGGT TGCTGACGAA GTCCGCAGCC TGGCGCACCG AACGCAGGAA TCGGCGAGTC AGGTGCAGGA GATGATCGAG CAACTGCAAT CCGGTGCCCG TGAAGCCGTG TCGATCATGA ACGACAGCCA GCGCGAGAGC GTTGAAACGG TCGGCATTGC CAACAAGGCC GTTGCAAGCC TTGAGCACGT GACCGAACGC ATTGGCGAAA TCGATGGCAT GAACCAGTCG GTCGCTGCCG CCACCGAAGA GCAGACCGCC GTCGTGGAAG CGATCAACGT GGACATCACC GAGATCAATA CGCTGAACCA GCAAGGCGTA GAGAACCTGA ACGCGACCCT GCGCGCGTGC ACTGACCTTG AACAGCAGTC CACCCGACTG ACGCAGTTGG TGGGCAGTTT CAGGATCTGA
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Protein sequence | MRKSLKFSHK ILLAASLVVI AAFTLFTFYN DYLQRNALHV QLKENLNQTS ESTAGNIRNW LSGRILLVEN LAENASSPQS PQEQNRVLGQ PTLIATFMSI YQGRSDGSFV TQPPDDMSAD YDPRTRPWYV DALRAGKTIL TEPYLDAVTK GLVVTLATPI KGDSGVSGVI GGDLSLEILV KMISSLRMHG DGYAFLVDAN GRILVHPDTS LVMKTLAEVY PANTPRLSQD LSESEYAGKT QILTFAHVDG LPSVNWYVGV AMDKDIAYAA LGEFRNSAIV ATVIAVVLII LLLGMLLSVL LRPLNLMGRA MHDIAAGEGD LTKRLVIESQ DEFGHLGNGF NLFVERIHDS MREVASSTVQ LNEVALRVLN ASNSSMLNSD QQSHRTNSVA AAINELGAAT QEIAQNAARA SGHSSDARTL ASDGQDVVGQ NIEAMSRLSK RISSASGQIE TLNTKTANIG QILDVITGIS QQTNLLALNA AIEAARAGEA GRGFAVVADE VRSLAHRTQE SASQVQEMIE QLQSGAREAV SIMNDSQRES VETVGIANKA VASLEHVTER IGEIDGMNQS VAAATEEQTA VVEAINVDIT EINTLNQQGV ENLNATLRAC TDLEQQSTRL TQLVGSFRI
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