Gene VC0395_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0316 
Symbol 
ID5134706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp348707 
End bp350665 
Gene Length1959 bp 
Protein Length652 aa 
Translation table11 
GC content47% 
IMG OID640530639 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001215157 
Protein GI147672377 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATCTCTA ACTGGCTGAA GTGCCAAAAC ATAACTATAA ATTTATTAAT AATAATAACC 
CTATCGTTAT GGAAAGGAAT CACGATGAAA TTCAGCCATA AAATTGTTGC TGCGTCGTCT
GTACTTCTGC TTGCTACTGT TGCGCTGCTT TCGGGTAGCC AATACTTCAA AGTCCGAGAT
GAAATCCGCA GCATGGTTTC TGACAGTGTT GATGAGATTG TCGATGGTGT AAGTAAAACG
ACCGCCGAAG TCATCAATGG CAGAAAAAGT ATCGCGCAAT ACGCCACTAG CTTGATTGAG
AGCAATCCTG AACCCGATAA TGTGCGCACG ATCATCTCGC AACCTTTGAT CAAAAACACC
TTCCTTTTAG TAGGATTTGG TTTAGAGAAA GACGGTTCGA ATATCAATAA CGACCCGAGT
TGGAACCCGG GCCCGACTTG GGACCCACGT GTTCGTCCTT GGTATAAAGA CGCCAAAAAT
GCCGGTAAGT TGGTGATTAC CGCACCTTAC GCCGATTCCG CCAGCGGCGA AATTCTGGTT
TCTGTCGCAA CGCCAGTCAA AGACAGCGCA ACCGGGCAAT TCCTCGGTTC CATCTTTTAC
GATGTCAGCT TGGCTGAACT CGCTGAACTG GTTAACGAAG TAAAACTGTT TGATGCGGGT
TATGTCTTTA TTGTGTCCGA AGATGGCACC ACCATCGCCC ACCCGAAAAA AGAGTTCAAT
GGCAAACCCA TGTCAGAATT TTTGGGTGAA AGCAAAATCA ATGTTGATAC CCATCAAGTC
ATCATCAATG GCAAACCCTA TGCAGTCAGC TTCTCCGATG TAGAAGGCGA AGATTGGTAT
GTCGGTGTGG TGATTGATGA AGAAATTGCT TACGCCGCGC TAGATGAATT ACGAAGAAGT
ACGCTCATTT TCACTGTGAT CGCCTTAGTG ATCAGCGTGT TTGTTCTACT GTTTATCGTT
CGTGTACTAA TGAAACCTCT CGATACTCTT AACGACGCGA TTCAAAACGT GGCTTCTGGT
GAAGGTGACT TAACTCAGCG TTTGAGCACC AATACCGATG AAGAGTTTGC CAAACTGGCG
ATTGGTTTTA ATACCTTTAC TGAAACGCTA CAGAAGCAGT TGATCCAATC CAAAGCGATT
GGTGCCGAGA TCTTACGCGG TTCAGAATCC ACATCAATGA CGCTACAACA GTCGGCAGAA
GCCATGCGTT CTCAGCTTCA TGAGTTGGAA CAGTTGGCGA CCGCCATGCA TGAAATGGCG
ACGACGTCTT CAGATGTAGC CAATAATGCG CAAGGTGCCG CTTCGGCTGC AAAAGTGGCT
GACGATGCCG CCGCCGCAGG CACGGATGTG GTTACCAAAA CCACGAAAGC CATTGATACC
CTTTCTGCCA CTATTGATGC TGCGGTAGAC GATGTGAAAG TGCTGGAAAG CGCGACTGCA
AACATTGAAA CCGTGCTGAA AGTGATTAAC GACATTGCGG ATCAAACCAA CCTGCTCGCA
CTCAACGCAG CGATTGAAGC GGCGCGAGCC GGTGAATCTG GCCGCGGCTT TGCGGTGGTC
GCCGATGAAG TTCGTACTCT GGCACAGCGT ACTCAACAGT CCACGACGGA AATTCGTAAC
ATGATTGAGA AGCTGCAATC TGGAGCCAAT GCGGTTGCGA TTGCCATGAG CCACAGTAAA
GATACGGCGG CCAGTGCGGT CAACCAAGCG CAAGGCGCGA ATGAAGCGTT AGAAAAAATC
CGCCTTGCGA TTCAGCAGAT CAGCGATATG AACATTCAAA TCGCCTCCGC TGCGGAAGAA
CAAAGCTTAG TTGCAGAAGA GATCAACAAC AACACTGTCA AGATCAAAGA CCTGTCGGAT
CAAGTTGCTG AATCTGCTGA TGAAGCGAAC ATGTCGATGC AGATCCAAAC GGAAAATATC
CGCGAACAGG ATGCAATCTT GAATAAATTC AAAGTGTAA
 
Protein sequence
MISNWLKCQN ITINLLIIIT LSLWKGITMK FSHKIVAASS VLLLATVALL SGSQYFKVRD 
EIRSMVSDSV DEIVDGVSKT TAEVINGRKS IAQYATSLIE SNPEPDNVRT IISQPLIKNT
FLLVGFGLEK DGSNINNDPS WNPGPTWDPR VRPWYKDAKN AGKLVITAPY ADSASGEILV
SVATPVKDSA TGQFLGSIFY DVSLAELAEL VNEVKLFDAG YVFIVSEDGT TIAHPKKEFN
GKPMSEFLGE SKINVDTHQV IINGKPYAVS FSDVEGEDWY VGVVIDEEIA YAALDELRRS
TLIFTVIALV ISVFVLLFIV RVLMKPLDTL NDAIQNVASG EGDLTQRLST NTDEEFAKLA
IGFNTFTETL QKQLIQSKAI GAEILRGSES TSMTLQQSAE AMRSQLHELE QLATAMHEMA
TTSSDVANNA QGAASAAKVA DDAAAAGTDV VTKTTKAIDT LSATIDAAVD DVKVLESATA
NIETVLKVIN DIADQTNLLA LNAAIEAARA GESGRGFAVV ADEVRTLAQR TQQSTTEIRN
MIEKLQSGAN AVAIAMSHSK DTAASAVNQA QGANEALEKI RLAIQQISDM NIQIASAAEE
QSLVAEEINN NTVKIKDLSD QVAESADEAN MSMQIQTENI REQDAILNKF KV