Gene VC0395_0316 details

Gene Information

• Locus tag: VC0395_0316
• ID: 5134706
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: -
• Start bp: 348707
• End bp: 350665
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640530639
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_001215157
• Protein GI: 147672377
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCTCTA ACTGGCTGAA GTGCCAAAAC ATAACTATAA ATTTATTAAT AATAATAACC 
CTATCGTTAT GGAAAGGAAT CACGATGAAA TTCAGCCATA AAATTGTTGC TGCGTCGTCT 
GTACTTCTGC TTGCTACTGT TGCGCTGCTT TCGGGTAGCC AATACTTCAA AGTCCGAGAT 
GAAATCCGCA GCATGGTTTC TGACAGTGTT GATGAGATTG TCGATGGTGT AAGTAAAACG 
ACCGCCGAAG TCATCAATGG CAGAAAAAGT ATCGCGCAAT ACGCCACTAG CTTGATTGAG 
AGCAATCCTG AACCCGATAA TGTGCGCACG ATCATCTCGC AACCTTTGAT CAAAAACACC 
TTCCTTTTAG TAGGATTTGG TTTAGAGAAA GACGGTTCGA ATATCAATAA CGACCCGAGT 
TGGAACCCGG GCCCGACTTG GGACCCACGT GTTCGTCCTT GGTATAAAGA CGCCAAAAAT 
GCCGGTAAGT TGGTGATTAC CGCACCTTAC GCCGATTCCG CCAGCGGCGA AATTCTGGTT 
TCTGTCGCAA CGCCAGTCAA AGACAGCGCA ACCGGGCAAT TCCTCGGTTC CATCTTTTAC 
GATGTCAGCT TGGCTGAACT CGCTGAACTG GTTAACGAAG TAAAACTGTT TGATGCGGGT 
TATGTCTTTA TTGTGTCCGA AGATGGCACC ACCATCGCCC ACCCGAAAAA AGAGTTCAAT 
GGCAAACCCA TGTCAGAATT TTTGGGTGAA AGCAAAATCA ATGTTGATAC CCATCAAGTC 
ATCATCAATG GCAAACCCTA TGCAGTCAGC TTCTCCGATG TAGAAGGCGA AGATTGGTAT 
GTCGGTGTGG TGATTGATGA AGAAATTGCT TACGCCGCGC TAGATGAATT ACGAAGAAGT 
ACGCTCATTT TCACTGTGAT CGCCTTAGTG ATCAGCGTGT TTGTTCTACT GTTTATCGTT 
CGTGTACTAA TGAAACCTCT CGATACTCTT AACGACGCGA TTCAAAACGT GGCTTCTGGT 
GAAGGTGACT TAACTCAGCG TTTGAGCACC AATACCGATG AAGAGTTTGC CAAACTGGCG 
ATTGGTTTTA ATACCTTTAC TGAAACGCTA CAGAAGCAGT TGATCCAATC CAAAGCGATT 
GGTGCCGAGA TCTTACGCGG TTCAGAATCC ACATCAATGA CGCTACAACA GTCGGCAGAA 
GCCATGCGTT CTCAGCTTCA TGAGTTGGAA CAGTTGGCGA CCGCCATGCA TGAAATGGCG 
ACGACGTCTT CAGATGTAGC CAATAATGCG CAAGGTGCCG CTTCGGCTGC AAAAGTGGCT 
GACGATGCCG CCGCCGCAGG CACGGATGTG GTTACCAAAA CCACGAAAGC CATTGATACC 
CTTTCTGCCA CTATTGATGC TGCGGTAGAC GATGTGAAAG TGCTGGAAAG CGCGACTGCA 
AACATTGAAA CCGTGCTGAA AGTGATTAAC GACATTGCGG ATCAAACCAA CCTGCTCGCA 
CTCAACGCAG CGATTGAAGC GGCGCGAGCC GGTGAATCTG GCCGCGGCTT TGCGGTGGTC 
GCCGATGAAG TTCGTACTCT GGCACAGCGT ACTCAACAGT CCACGACGGA AATTCGTAAC 
ATGATTGAGA AGCTGCAATC TGGAGCCAAT GCGGTTGCGA TTGCCATGAG CCACAGTAAA 
GATACGGCGG CCAGTGCGGT CAACCAAGCG CAAGGCGCGA ATGAAGCGTT AGAAAAAATC 
CGCCTTGCGA TTCAGCAGAT CAGCGATATG AACATTCAAA TCGCCTCCGC TGCGGAAGAA 
CAAAGCTTAG TTGCAGAAGA GATCAACAAC AACACTGTCA AGATCAAAGA CCTGTCGGAT 
CAAGTTGCTG AATCTGCTGA TGAAGCGAAC ATGTCGATGC AGATCCAAAC GGAAAATATC 
CGCGAACAGG ATGCAATCTT GAATAAATTC AAAGTGTAA 

 

Protein sequence

MISNWLKCQN ITINLLIIIT LSLWKGITMK FSHKIVAASS VLLLATVALL SGSQYFKVRD 
EIRSMVSDSV DEIVDGVSKT TAEVINGRKS IAQYATSLIE SNPEPDNVRT IISQPLIKNT 
FLLVGFGLEK DGSNINNDPS WNPGPTWDPR VRPWYKDAKN AGKLVITAPY ADSASGEILV 
SVATPVKDSA TGQFLGSIFY DVSLAELAEL VNEVKLFDAG YVFIVSEDGT TIAHPKKEFN 
GKPMSEFLGE SKINVDTHQV IINGKPYAVS FSDVEGEDWY VGVVIDEEIA YAALDELRRS 
TLIFTVIALV ISVFVLLFIV RVLMKPLDTL NDAIQNVASG EGDLTQRLST NTDEEFAKLA 
IGFNTFTETL QKQLIQSKAI GAEILRGSES TSMTLQQSAE AMRSQLHELE QLATAMHEMA 
TTSSDVANNA QGAASAAKVA DDAAAAGTDV VTKTTKAIDT LSATIDAAVD DVKVLESATA 
NIETVLKVIN DIADQTNLLA LNAAIEAARA GESGRGFAVV ADEVRTLAQR TQQSTTEIRN 
MIEKLQSGAN AVAIAMSHSK DTAASAVNQA QGANEALEKI RLAIQQISDM NIQIASAAEE 
QSLVAEEINN NTVKIKDLSD QVAESADEAN MSMQIQTENI REQDAILNKF KV