Gene Hhal_0549 details

Gene Information

• Locus tag: Hhal_0549
• ID: 4709513
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorhodospira halophila SL1
• Kingdom: Bacteria
• Replicon accession: NC_008789
• Strand: +
• Start bp: 619509
• End bp: 621431
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 639855007
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_001002137
• Protein GI: 121997350
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.43692
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCAGCG CTGTCCGTCT GACCCCGAAG CTCCTCATCC TGTTCGGCAT CCCCACCCTG 
CTGGCCTTCG TGATCGTCGG AGGGGTCGTC ACCCAACAGG CGAGTGATCG GTTCAGCACC 
GAGATCACCG ACTCGACCCA GGAACTCAGC GAGGCCGGTG CCGAGGCCAT CAGCCAGTGG 
CTGGACACCC ACACGGCCTT CGTATCCGCC CTGGCCCAAA GCGAGGCGCT CAGTTCGGAC 
GAGCCGGACC GGATCAGCGA GTTCCTCGCC CGGCAGGGTG AGCACATGAG CGACGAATAC 
GAGGTGCTGA TCTTCGTCGA CACCGAAGGA ACCGCCACCT ACCACCACGG CGGTGAGCAA 
ACCGACCTGT CCGGACGCGA CTATTGGCAG AACCTAGTCG AGGAGCAGCA AGAGACGCAG 
GCCATCTCGG ATCCGGTTCA TTCGGCCAGC ACCGGCAACC CGATCACCGT CATCGCCGAG 
GCGGTCACCG ATGAACGCGG CGAGGTCGTC GGCCTTGTGG CCGTGACCGT CACCCTGGAT 
ACCCTGGCCG ATGTCGTGGC CACGGCAACG GACCGCACCG GCGCCCTGCC GTGGGCGCTC 
GGCGCCGACG GCCTGACCGT CGCCCACCCC GACGAGGACG TGCGCATGGA GCAGAACGCG 
CTGGAATCCG GGGACGAGGA CTATCGTGCG ATCGCCCAGC GCATGGTCGA CGGCGAACGC 
GGCGTGGGCA CCTTCACCGA CGCCGACGGC ACCGCCTATA CCGCATCCTT CGCCCCGGTC 
TCCGGGCTCT CCGGCTGGTC CCTGGGGATC GCCGTTCCGG AGTCGGAACT GATGGCCGCG 
GCCCGCGACC TGCGGCAGAA CCTGCTGGTG ATTTTCGGCG CAGCGGTTCT GGTGCTCGGC 
GGTATCATCG TACTGGTGGC CCGGCGAATC GCCCGCCCCA TCGCCGCCAC CAGCCGAGCC 
CTGGGCGAGA TCGCCAGCGG CGATGCCGAC CTCACCCAGC GGCTGGAAGT TCAGACCCGG 
GATGAGGTCG GCGAGCTGGC GAGCAACTTC AACGCCTTCG TCGATCGGAT GCAGGAACTG 
ATTGGCTCGG TCTCGGACGC TTCGACCCAG CTCTCGGCCT CTGCCGAGGA GCTCTCCGCC 
TCGGTGCGCG AGACCAGCGG CCAATTGCGC GAGCAGCAGT CCGAGACCGA GCAGGTGGCC 
ACCTCCATGA ATGAGATGGC CGCCACCATC CAGCAGGTCG CCGAGAACGC CTCGGACGCC 
TCCGAGGCGG CCCGGAGATC CGATCAGGCC GCCCACTCCG GCGCGGATGT CGTGCAGGAG 
AATGCCAACG AGATCCGCCA GGTGGCCGAG CAGGCCGAGA CCGCCGCCGG CGTCGTCCAG 
CAGCTCAACC AGGACGCCGA GCGGGTCACC AAGGTGCTCG ACGTGATCCA CGAGATCACC 
GAGCAGACCA ACCTCCTCGC CCTCAACGCC GCCATCGAGG CGGCCCGCGC CGGCGAGAAC 
GGCCGCGGGT TCTCGGTGGT GGCCGAGGAG GTGCGCAAGC TAGCCACCCG CACGCAGTCT 
TCCACGGAAG AGATCCGCGA GATCCTCGAC ACCCTGCGCG GACGCATCGA AGACGCCGCG 
CAGGCGATGG AGAACGGCCG CAGCAGCTCG AACCAGGCGG TGACCATCGC CGCACGGGCA 
TCCGAGTCAC TGGGCGCGAT CACCGACTCG GTGAGCACCA TCACCGACAT GAACACCCAG 
ATCGCCAGTG CCGCGGAGGA GCAGTCCGCG GCCTCCGAGG AGATCAACCG CTCACTCAAT 
CAGATCAAGG CGACCATTGA CGCCACCGCC AGCGGCGCCT CCCAGGTTGC ATCCGCCAGC 
GAGGAGGTGG CCCGGCTGGC CGCGGACCTG CAGGATCGCG TGGGGCAGTT CCGCGTGCGC 
TGA 

 

Protein sequence

MFSAVRLTPK LLILFGIPTL LAFVIVGGVV TQQASDRFST EITDSTQELS EAGAEAISQW 
LDTHTAFVSA LAQSEALSSD EPDRISEFLA RQGEHMSDEY EVLIFVDTEG TATYHHGGEQ 
TDLSGRDYWQ NLVEEQQETQ AISDPVHSAS TGNPITVIAE AVTDERGEVV GLVAVTVTLD 
TLADVVATAT DRTGALPWAL GADGLTVAHP DEDVRMEQNA LESGDEDYRA IAQRMVDGER 
GVGTFTDADG TAYTASFAPV SGLSGWSLGI AVPESELMAA ARDLRQNLLV IFGAAVLVLG 
GIIVLVARRI ARPIAATSRA LGEIASGDAD LTQRLEVQTR DEVGELASNF NAFVDRMQEL 
IGSVSDASTQ LSASAEELSA SVRETSGQLR EQQSETEQVA TSMNEMAATI QQVAENASDA 
SEAARRSDQA AHSGADVVQE NANEIRQVAE QAETAAGVVQ QLNQDAERVT KVLDVIHEIT 
EQTNLLALNA AIEAARAGEN GRGFSVVAEE VRKLATRTQS STEEIREILD TLRGRIEDAA 
QAMENGRSSS NQAVTIAARA SESLGAITDS VSTITDMNTQ IASAAEEQSA ASEEINRSLN 
QIKATIDATA SGASQVASAS EEVARLAADL QDRVGQFRVR