Gene VSAL_II1022 details

Gene Information

• Locus tag: VSAL_II1022
• ID: 6962334
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011313
• Strand: +
• Start bp: 1119247
• End bp: 1121133
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643382270
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002265301
• Protein GI: 209809762
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.771007
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTAAAA ATTTATCCCT TAAAAATAAG CTCGCGATTT CCGCTGGTGC CGCAATTATA 
CTCGGGGGAG TATTAGTTGA AGCTCTATCA TTTAACGCCT CATTAGATCG ACTAGATAAT 
GAAGTAGAGC AACGATTAGA AAGCACAACG GCTTCATACA ACCAATATGT AACTGATTGG 
ATCCTATCAA AAGAGCGCGC ACTGACCTCT TTGCCTAAAG AAGCCAACAA AGACGCCATT 
GTTGTTCACT TAAAACAAGT TCGTGATTCA GCGAAATTTG ATAACGTGTT CCTCGCTTAC 
CCTGATGGCT CCCAAGCGAA TGCCAACGGC GTGATCCTGC CTCCTGGTAA TGATGATCCT 
AGACAATGGG GTTGGTACAC AAATGCCGTT GCTGCACCAT CAAAGGTATT CATGGACAAC 
CCAACGGTTG CCGCAGCAAC AGGAGCAAAT GTCGTCTCTT TAGGGAAAGC ATTAAACCTA 
CATGGCCAGC AAGTGGTTGT TGGTACTGAT GTTGAAATCA CCGATATATT AAATAGCATG 
GAAAAAGTAA TCATTCCAGG CGAAGGATTT ATGTTTATTG CTAATAATAA AGGCAATATT 
TTCACCCACC CCAATACCGC ATTATTGAAT AAGCCCGTGT CTGCATTGGG CCTCGATTTC 
TCAACGATTC AGCAAGCAAC AAATAGTAAT TCTGATATCA CAATCGAGCT CGATGGTGAA 
AAATACATTA TGTATGCTCA GAAAATAGAG GGAACCAGTC TAATTACAGT CAATGTAATT 
AATTACGATT CGTTAGTTGC ACCTCTATTT GATGCGGTTT CAGGACAAAT TATCGTTACT 
GCCATCGTTG TTATTATCTG TACTTTATTA TTTAATTTAT TATGTGGCAT TCTGTTCCGT 
CCACTCAACA ATGTCTCTCA AGCACTTGCT CAGATTGCCA ATGGCAGCGG TGATTTAACC 
CAACGAATTC ATGTAGAGAA CAGAGATGAA GTGGGAGAAC TGGCGAATAA TTTCAATACC 
TTTGTTGAAA GTTTACAGTT GTTAATTCAA CATATCCGCC AACAATCACA ACAGTTAACC 
GATGGTTCAG AGCAAAGTAC AACTCGTGCT AATAACTCAG TAAAAGAACT CAACCTTCAA 
CAACAAGAAA TCACCATGGT AGCCACTGCC GTAACCGAAA TGGCATCTGC GACTCGCGAA 
ATCGCCTCTC ATGCAGAGCA AACAGCTCAA GCCGCACAAA ACTCATCAAG CAGCACTCAA 
AAAGGACATT CTTTAGTGGT TGATACTAAA GCATCCATCA ACAGTCTTGC GAATGAAGTA 
AGTGAAGCAA GCAATGTGAT CAGTGAACTA CAACAACATT CACAAGAAAT AAATACGGTA 
CTTGCGACGA TTCAAGGTAT TGCTGAACAA ACGAACTTAC TTGCATTAAA TGCCGCAATT 
GAAGCAGCAC GAGCAGGAGA GCAAGGCCGC GGTTTTGCCG TAGTAGCTGA CGAAGTTCGA 
GTGTTATCAC AACGTACACA CACATCAACA GAAGAAATAA AATCGACTAT CGACATTTTA 
CAACAAACCA CAGCTCGTGC CGTTAATCTA ATGAAAAGCA GCTCTGAACT TGCGAATAAC 
TCAGTTGAAG ATGCCGATCG TGCCGCACTC GCATTAGAAG ACATTAGCGC ATCAGTCACG 
CTAATTAGTG ATATGGCGAC TCAAATCGCT ACCGCTGCGG AAGAACAAAC CCATGTAACA 
GGGGAAATAA CACAAAACAT CACGTCGATT AAAGACGTCA CGGATCAACT GGTTATTGAT 
TCAGAAGACA GTTTAACTCA ATCCCATGAC CTTAAAGAAC AAGCCGTTGA TTTAAGCAAG 
AAAGTGGCAA CCTTTAAGCT TTCATAA 

 

Protein sequence

MLKNLSLKNK LAISAGAAII LGGVLVEALS FNASLDRLDN EVEQRLESTT ASYNQYVTDW 
ILSKERALTS LPKEANKDAI VVHLKQVRDS AKFDNVFLAY PDGSQANANG VILPPGNDDP 
RQWGWYTNAV AAPSKVFMDN PTVAAATGAN VVSLGKALNL HGQQVVVGTD VEITDILNSM 
EKVIIPGEGF MFIANNKGNI FTHPNTALLN KPVSALGLDF STIQQATNSN SDITIELDGE 
KYIMYAQKIE GTSLITVNVI NYDSLVAPLF DAVSGQIIVT AIVVIICTLL FNLLCGILFR 
PLNNVSQALA QIANGSGDLT QRIHVENRDE VGELANNFNT FVESLQLLIQ HIRQQSQQLT 
DGSEQSTTRA NNSVKELNLQ QQEITMVATA VTEMASATRE IASHAEQTAQ AAQNSSSSTQ 
KGHSLVVDTK ASINSLANEV SEASNVISEL QQHSQEINTV LATIQGIAEQ TNLLALNAAI 
EAARAGEQGR GFAVVADEVR VLSQRTHTST EEIKSTIDIL QQTTARAVNL MKSSSELANN 
SVEDADRAAL ALEDISASVT LISDMATQIA TAAEEQTHVT GEITQNITSI KDVTDQLVID 
SEDSLTQSHD LKEQAVDLSK KVATFKLS