More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_2448 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  72.73 
 
 
647 aa  922    Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  100 
 
 
646 aa  1320    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_010501  PputW619_4580  methyl-accepting chemotaxis sensory transducer  73.92 
 
 
648 aa  946    Pseudomonas putida W619  Bacteria  normal  normal  0.0108713 
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  95.67 
 
 
646 aa  1246    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  78.09 
 
 
648 aa  1018    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_010322  PputGB1_0629  methyl-accepting chemotaxis sensory transducer with Cache sensor  73.11 
 
 
647 aa  909    Pseudomonas putida GB-1  Bacteria  normal  0.624074  hitchhiker  0.000681907 
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  72.73 
 
 
647 aa  922    Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_009654  Mmwyl1_0130  methyl-accepting chemotaxis sensory transducer  39.08 
 
 
671 aa  426  1e-118  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2719  methyl-accepting chemotaxis sensory transducer  37.65 
 
 
655 aa  426  1e-118  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_3100  chemotaxis sensory transducer  33.64 
 
 
652 aa  374  1e-102  Shewanella denitrificans OS217  Bacteria  normal  0.594551  n/a   
 
 
-
 
NC_008752  Aave_1081  methyl-accepting chemotaxis sensory transducer  30.88 
 
 
629 aa  300  7e-80  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1799  methyl-accepting chemotaxis sensory transducer with Cache sensor  28.81 
 
 
668 aa  286  5.999999999999999e-76  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.481177  n/a   
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  34.3 
 
 
623 aa  272  1e-71  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  32.9 
 
 
630 aa  271  4e-71  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_007519  Dde_3020  methyl-accepting chemotaxis sensory transducer  30.26 
 
 
697 aa  271  4e-71  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0194  methyl-accepting chemotaxis sensory transducer  35.21 
 
 
623 aa  267  5e-70  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5569  methyl-accepting chemotaxis sensory transducer with Cache sensor  28.26 
 
 
630 aa  266  8.999999999999999e-70  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0316  methyl-accepting chemotaxis protein  35.06 
 
 
652 aa  266  1e-69  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  33.52 
 
 
622 aa  265  2e-69  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
630 aa  265  2e-69  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  33.58 
 
 
630 aa  265  2e-69  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  31.96 
 
 
630 aa  265  2e-69  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  33.73 
 
 
623 aa  265  2e-69  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  32.78 
 
 
630 aa  264  3e-69  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  31.96 
 
 
630 aa  265  3e-69  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.78 
 
 
630 aa  262  1e-68  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  35.97 
 
 
627 aa  261  2e-68  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  31.6 
 
 
630 aa  260  5.0000000000000005e-68  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  35.3 
 
 
633 aa  260  6e-68  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  35.97 
 
 
636 aa  259  1e-67  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  34.32 
 
 
625 aa  258  2e-67  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  30.87 
 
 
645 aa  258  3e-67  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  31.8 
 
 
645 aa  256  6e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  32.65 
 
 
629 aa  257  6e-67  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  30.34 
 
 
645 aa  256  1.0000000000000001e-66  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  34.36 
 
 
626 aa  255  1.0000000000000001e-66  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_0906  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.57 
 
 
626 aa  255  2.0000000000000002e-66  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1629  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.39 
 
 
623 aa  255  2.0000000000000002e-66  Shewanella pealeana ATCC 700345  Bacteria  normal  0.438395  n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  35.08 
 
 
627 aa  254  2.0000000000000002e-66  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  34.39 
 
 
627 aa  254  3e-66  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_007953  Bxe_C1139  methyl-accepting chemotaxis sensory transducer, Cache sensor  27.54 
 
 
630 aa  254  3e-66  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.584827 
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  33.77 
 
 
629 aa  254  4.0000000000000004e-66  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  32.36 
 
 
630 aa  254  4.0000000000000004e-66  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  43.18 
 
 
559 aa  253  7e-66  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_3181  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.26 
 
 
698 aa  253  7e-66  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  30.19 
 
 
645 aa  253  8.000000000000001e-66  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.36 
 
 
628 aa  252  2e-65  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_008751  Dvul_0949  methyl-accepting chemotaxis sensory transducer  28.69 
 
 
695 aa  251  2e-65  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.541026 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  34.12 
 
 
628 aa  251  3e-65  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_002967  TDE2142  methyl-accepting chemotaxis protein  28.07 
 
 
712 aa  250  5e-65  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  34.01 
 
 
626 aa  250  7e-65  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  32.6 
 
 
629 aa  249  1e-64  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.15 
 
 
626 aa  248  2e-64  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  34.17 
 
 
628 aa  249  2e-64  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_009457  VC0395_A1741  methyl-accepting chemotaxis protein  34.26 
 
 
623 aa  248  2e-64  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  33.94 
 
 
643 aa  248  3e-64  Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  32.35 
 
 
629 aa  248  3e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  33.88 
 
 
713 aa  248  3e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.21 
 
 
626 aa  248  3e-64  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  34.95 
 
 
638 aa  247  4.9999999999999997e-64  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_008577  Shewana3_3950  methyl-accepting chemotaxis sensory transducer  33.27 
 
 
623 aa  246  8e-64  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_3752  methyl-accepting chemotaxis sensory transducer  33.27 
 
 
623 aa  246  9e-64  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3825  methyl-accepting chemotaxis sensory transducer  33.82 
 
 
623 aa  246  9.999999999999999e-64  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  29.82 
 
 
645 aa  246  9.999999999999999e-64  Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  31.82 
 
 
639 aa  245  1.9999999999999999e-63  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  35.82 
 
 
639 aa  245  1.9999999999999999e-63  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  33.58 
 
 
638 aa  245  1.9999999999999999e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  32.88 
 
 
628 aa  244  3e-63  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4382  chemotaxis sensory transducer  34.12 
 
 
738 aa  244  3.9999999999999997e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.218372 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  33.46 
 
 
638 aa  244  3.9999999999999997e-63  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_009438  Sputcn32_2121  methyl-accepting chemotaxis sensory transducer  33.4 
 
 
622 aa  243  6e-63  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0596  methyl-accepting chemotaxis sensory transducer  33.9 
 
 
640 aa  243  7e-63  Shewanella loihica PV-4  Bacteria  normal  normal  0.270432 
 
 
-
 
NC_008751  Dvul_1305  methyl-accepting chemotaxis sensory transducer  28.08 
 
 
695 aa  243  9e-63  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.0484461 
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  32.55 
 
 
641 aa  242  2e-62  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_008751  Dvul_2572  methyl-accepting chemotaxis sensory transducer  28.74 
 
 
695 aa  241  2.9999999999999997e-62  Desulfovibrio vulgaris DP4  Bacteria  hitchhiker  0.00207311  hitchhiker  0.0002457 
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  33.39 
 
 
629 aa  241  4e-62  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_29760  putative chemotaxis transducer  33.08 
 
 
714 aa  241  4e-62  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  33.33 
 
 
714 aa  239  8e-62  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  32.13 
 
 
640 aa  239  1e-61  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  40.4 
 
 
541 aa  239  1e-61  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  32.53 
 
 
626 aa  239  1e-61  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  42.21 
 
 
712 aa  239  2e-61  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009052  Sbal_0193  methyl-accepting chemotaxis sensory transducer  34.15 
 
 
623 aa  238  2e-61  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
626 aa  238  2e-61  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  33.33 
 
 
712 aa  237  5.0000000000000005e-61  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  31.92 
 
 
628 aa  237  5.0000000000000005e-61  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_4141  methyl-accepting chemotaxis sensory transducer  34.95 
 
 
623 aa  237  5.0000000000000005e-61  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_3017  methyl-accepting chemotaxis sensory transducer  31.79 
 
 
630 aa  237  6e-61  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4557  methyl-accepting chemotaxis protein  33.39 
 
 
623 aa  237  6e-61  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_0252  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.6 
 
 
623 aa  237  6e-61  Shewanella woodyi ATCC 51908  Bacteria  normal  0.866394  normal 
 
 
-
 
NC_009997  Sbal195_4274  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.95 
 
 
623 aa  236  9e-61  Shewanella baltica OS195  Bacteria  normal  normal  0.179842 
 
 
-
 
NC_011663  Sbal223_0194  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.95 
 
 
623 aa  236  9e-61  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  34.9 
 
 
643 aa  234  3e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  33.86 
 
 
636 aa  234  3e-60  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
560 aa  234  3e-60  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_011883  Ddes_0821  methyl-accepting chemotaxis sensory transducer  29.08 
 
 
696 aa  234  3e-60  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  35.12 
 
 
638 aa  232  1e-59  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  35.12 
 
 
638 aa  232  1e-59  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2364  methyl-accepting chemotaxis sensory transducer  30.66 
 
 
622 aa  233  1e-59  Shewanella baltica OS155  Bacteria  normal  0.493821  n/a   
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  35.12 
 
 
641 aa  233  1e-59  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
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