More than 300 homologs were found in PanDaTox collection
for query gene Ssed_3856 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  64.53 
 
 
641 aa  839    Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  100 
 
 
640 aa  1304    Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_009092  Shew_0596  methyl-accepting chemotaxis sensory transducer  72.66 
 
 
640 aa  936    Shewanella loihica PV-4  Bacteria  normal  normal  0.270432 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  35.51 
 
 
645 aa  394  1e-108  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  34.16 
 
 
645 aa  389  1e-106  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  34.42 
 
 
645 aa  384  1e-105  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  34.42 
 
 
645 aa  384  1e-105  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  35.15 
 
 
638 aa  381  1e-104  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  34.06 
 
 
645 aa  376  1e-103  Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  34.74 
 
 
643 aa  378  1e-103  Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  34.32 
 
 
636 aa  365  2e-99  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00464  methyl-accepting chemotaxis protein  34.01 
 
 
636 aa  355  1e-96  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  35.11 
 
 
636 aa  355  2e-96  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  33.07 
 
 
639 aa  347  6e-94  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  34.22 
 
 
638 aa  343  5.999999999999999e-93  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_008322  Shewmr7_3750  methyl-accepting chemotaxis sensory transducer  34.37 
 
 
638 aa  340  2.9999999999999998e-92  Shewanella sp. MR-7  Bacteria  normal  0.666265  normal  0.186245 
 
 
-
 
NC_008577  Shewana3_0272  methyl-accepting chemotaxis sensory transducer  34.21 
 
 
638 aa  340  5.9999999999999996e-92  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00090491  hitchhiker  0.000000349734 
 
 
-
 
NC_008321  Shewmr4_0271  methyl-accepting chemotaxis sensory transducer  34.37 
 
 
638 aa  340  7e-92  Shewanella sp. MR-4  Bacteria  normal  0.758035  hitchhiker  0.0000678809 
 
 
-
 
NC_009438  Sputcn32_0387  methyl-accepting chemotaxis sensory transducer  34.74 
 
 
638 aa  338  9.999999999999999e-92  Shewanella putrefaciens CN-32  Bacteria  normal  0.408395  n/a   
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
638 aa  336  7e-91  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
638 aa  336  7e-91  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  33.59 
 
 
642 aa  336  7.999999999999999e-91  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
641 aa  336  7.999999999999999e-91  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
NC_011663  Sbal223_0279  methyl-accepting chemotaxis sensory transducer  34.42 
 
 
638 aa  335  2e-90  Shewanella baltica OS223  Bacteria  normal  0.983838  normal 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  33.75 
 
 
638 aa  331  2e-89  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_007954  Sden_2239  chemotaxis sensory transducer  32.86 
 
 
648 aa  331  3e-89  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001273  methyl-accepting chemotaxis protein  31.37 
 
 
638 aa  315  1.9999999999999998e-84  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05150  adenylyl cyclase class-3/4/guanylyl cyclase  33.44 
 
 
650 aa  315  1.9999999999999998e-84  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  31.14 
 
 
638 aa  313  6.999999999999999e-84  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3723  HAMP domain-containing protein  30.02 
 
 
628 aa  300  4e-80  Cupriavidus metallidurans CH34  Bacteria  normal  0.21159  normal  0.539738 
 
 
-
 
NC_007953  Bxe_C1067  methyl-accepting chemotaxis sensory transducer  32.19 
 
 
634 aa  299  1e-79  Burkholderia xenovorans LB400  Bacteria  normal  0.318926  normal 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  32.16 
 
 
626 aa  278  3e-73  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0604  methyl-accepting chemotaxis sensory transducer  30.58 
 
 
641 aa  272  1e-71  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.471742  n/a   
 
 
-
 
NC_008700  Sama_0552  putative methyl-accepting chemotaxis sensory transducer  30.78 
 
 
648 aa  268  2e-70  Shewanella amazonensis SB2B  Bacteria  normal  0.283806  decreased coverage  0.00439756 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  29.95 
 
 
629 aa  263  8e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  34.47 
 
 
713 aa  261  2e-68  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  29.95 
 
 
629 aa  261  3e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  36.13 
 
 
627 aa  259  9e-68  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.46 
 
 
626 aa  257  5e-67  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  29.24 
 
 
623 aa  256  7e-67  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  33.27 
 
 
639 aa  254  3e-66  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.58 
 
 
626 aa  254  4.0000000000000004e-66  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  33.83 
 
 
632 aa  254  4.0000000000000004e-66  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  33.8 
 
 
712 aa  252  2e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  33.62 
 
 
632 aa  251  4e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  29.03 
 
 
633 aa  249  9e-65  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  32.21 
 
 
630 aa  249  1e-64  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  32.21 
 
 
630 aa  249  1e-64  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  32.21 
 
 
630 aa  248  2e-64  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.21 
 
 
630 aa  248  2e-64  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  28.78 
 
 
712 aa  249  2e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.19 
 
 
630 aa  248  3e-64  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_009783  VIBHAR_00119  methyl-accepting chemotaxis protein  33.06 
 
 
626 aa  248  3e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  33.9 
 
 
630 aa  247  6e-64  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  33.01 
 
 
629 aa  247  6e-64  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  31.5 
 
 
627 aa  246  8e-64  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  34.03 
 
 
629 aa  246  9.999999999999999e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  34.68 
 
 
629 aa  245  1.9999999999999999e-63  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4628  methyl-accepting chemotaxis sensory transducer  26.78 
 
 
620 aa  245  1.9999999999999999e-63  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_3736  methyl-accepting chemotaxis sensory transducer  26.78 
 
 
620 aa  244  1.9999999999999999e-63  Burkholderia cenocepacia HI2424  Bacteria  normal  0.455432  normal  0.0212994 
 
 
-
 
NC_010515  Bcenmc03_3785  methyl-accepting chemotaxis sensory transducer  26.93 
 
 
620 aa  244  3.9999999999999997e-63  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0060774  normal  0.0147123 
 
 
-
 
NC_002947  PP_1371  methyl-accepting chemotaxis transducer  36.09 
 
 
624 aa  243  6e-63  Pseudomonas putida KT2440  Bacteria  normal  normal  0.318672 
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  33.54 
 
 
630 aa  243  6e-63  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  33.69 
 
 
630 aa  243  7e-63  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009656  PSPA7_4876  chemotactic transducer PctA  33.9 
 
 
629 aa  243  7.999999999999999e-63  Pseudomonas aeruginosa PA7  Bacteria  normal  0.647167  n/a   
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  29.98 
 
 
630 aa  243  9e-63  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  31.98 
 
 
647 aa  243  1e-62  Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_010501  PputW619_1011  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.62 
 
 
624 aa  241  2e-62  Pseudomonas putida W619  Bacteria  normal  0.752503  hitchhiker  0.0000000000251926 
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  33.33 
 
 
627 aa  242  2e-62  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_009512  Pput_4352  methyl-accepting chemotaxis sensory transducer  35.87 
 
 
624 aa  241  2e-62  Pseudomonas putida F1  Bacteria  normal  normal  0.0132701 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  39.58 
 
 
716 aa  241  2e-62  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  31.77 
 
 
647 aa  241  2.9999999999999997e-62  Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  29.98 
 
 
631 aa  241  2.9999999999999997e-62  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  31.05 
 
 
648 aa  241  2.9999999999999997e-62  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  32.69 
 
 
625 aa  241  4e-62  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  32.13 
 
 
646 aa  240  5.999999999999999e-62  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  32.13 
 
 
646 aa  239  1e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_010322  PputGB1_4443  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.65 
 
 
624 aa  239  1e-61  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.0000033578 
 
 
-
 
NC_010501  PputW619_4580  methyl-accepting chemotaxis sensory transducer  31.98 
 
 
648 aa  238  2e-61  Pseudomonas putida W619  Bacteria  normal  normal  0.0108713 
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  33.83 
 
 
628 aa  237  6e-61  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  29.28 
 
 
623 aa  236  8e-61  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  40 
 
 
620 aa  236  1.0000000000000001e-60  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  33.77 
 
 
628 aa  235  2.0000000000000002e-60  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  39.13 
 
 
545 aa  234  3e-60  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  29.26 
 
 
626 aa  234  3e-60  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_007005  Psyr_3534  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  31.35 
 
 
629 aa  234  4.0000000000000004e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.667463  normal  0.0882884 
 
 
-
 
NC_009654  Mmwyl1_1383  methyl-accepting chemotaxis sensory transducer  34.02 
 
 
636 aa  234  5e-60  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00353653  normal  0.775857 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  32.11 
 
 
628 aa  234  5e-60  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0629  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.2 
 
 
647 aa  233  6e-60  Pseudomonas putida GB-1  Bacteria  normal  0.624074  hitchhiker  0.000681907 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
638 aa  233  6e-60  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009654  Mmwyl1_0130  methyl-accepting chemotaxis sensory transducer  31.37 
 
 
671 aa  233  8.000000000000001e-60  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.05 
 
 
629 aa  233  1e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  38.12 
 
 
541 aa  233  1e-59  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  38.33 
 
 
634 aa  232  2e-59  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  29.17 
 
 
626 aa  231  2e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  39.71 
 
 
621 aa  231  2e-59  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  29.48 
 
 
626 aa  231  4e-59  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_008391  Bamb_5471  methyl-accepting chemotaxis sensory transducer  26.32 
 
 
620 aa  230  5e-59  Burkholderia ambifaria AMMD  Bacteria  normal  0.407039  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  38.03 
 
 
541 aa  230  6e-59  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.47 
 
 
627 aa  230  7e-59  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
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