| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2239 |
|---|
| Symbol | |
|---|
| ID | 4018731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2658235 |
|---|
| End bp | 2660181 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637956261 |
|---|
| Product | chemotaxis sensory transducer |
|---|
| Protein accession | YP_563242 |
|---|
| Protein GI | 91793591 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTGA ATTTTCAAAA TTTTAAAATC CGCCATTTAT TAATTTTAAT TATTAGCTTT
GCGTTAATCT TTTTAGCGGC ATCCACTACG CTTCTCAATC GGTCGCTATT TTTTGCTTCT
GCAGAGAAAA GCATTGAAGA GGAACTTCTG CCTAATCAGC TTGCAAAAAT TGAAGCGCAA
ATCCGCTATC AGCTCAGTAC ACCCATTGAA CTTTCAAAAG CCATGAGCCA AAACACTTTC
ATCTTAGATT GGGTTATGGC ACAGGAACCC GCGGCTCAAC AACAGCAAGT GATTGATTAT
TTAGCTCATG TGCAGAAAGA AAATAAAGCC GGTGTGGTTT ATTGGGTATC AAACGTCAGT
AACCAATATT TGACCAATAA CGGCGTATAC AAAACCATGA GCCAAAGTGA CGAGAAAGAC
GCTTGGTTTT ACCGTTTTTT AAGCGGCAAT AAAACCTTTG AGATCTCCTT CGATTTTGCC
GCTAATGGTG TCGATTTGAC GGCTTATGTT AACTACAGAG TGAAATACAA TGGCAGAGAC
TTAGGGGTTG TCGGCATTGG TTATAGCGTC AATGAGTTAA GCAAAAACAT TCTCAATAAT
AAGGTGGGCG AAACCGGTTA TGTGTTTATT ACTAATGATG CCGGCGACAT CATTATTCAT
CCTACATTGA ATCAATTAGA GAGCAAAAAA CTTCGTCAAA ACAAAGGCTT TACCGACATT
GCCGATAGCT TGTTAAAGCC TGATGCCAGT TATAGCTTTA ATGAAACCAA GCTAAAGGGG
GAGAATGTCT ATGTGGCGAG TGTGGGGATC CCTGAGCTTA ACTGGAAGAT TTTGGGGGTG
CTGCCTAGCG AAGAGCCCAT GGCCAGTATT CGTTCCACCT TGCTTAAAAG CAGCGCCTTA
AACTTAGTGA TAGTGATTTT CTTTATTTTA GTCATGGTCA ATCTTGCCAG CCGTATTACC
TTGCCCATCA CAGAAATTGG TGAGCGCTTG ATGACAATGG CAAAAGCGGG CGGCGATTTA
ACCCATCAGC TTAATCAAGA CAGGCGTGAT GAACTGGGCA CCTTAGCCCA AGGATTTAAT
GCCATCATCA GCAAGGTGCG CTCCATCATG GTGGACATCA AGACATTAGA AGATCAGATG
ACCCACTCGT TCAATGATAT GCGCCATATG TCCTCAGAAA TTAATAACTG CGTCAGCGCT
CAGCAGCAGG AGTCAGATTC TGTGGCAGCG GCGGCTACAC AAATGACCCA CAGCATACAG
TCAGTGAGTG ATTTAGCCAA TGAATCGGCC GCAAACACTG AGATGACTCA GCAGAAGATA
ATCCAAGTCA ATCAAGGGGT GCTTGAGTGT AATCAATTGA TGCAATCCTT ACATGTGAGT
AATGAAAGCA CTCAAGAAAA AATCTCTCAG CTGGCGGCGC AAACCTTGAC CATTAGTTCA
GTGGTGGATG TGATCAGCAG TATTTCTGAA CAAACCAATT TGCTGGCATT AAATGCCGCC
ATTGAAGCGG CTCGGGCCGG TGAACAAGGC CGTGGTTTTG CCGTGGTTGC CGATGAAGTG
CGTACCTTGG CGGCACGGAC GCAAAAGTCC ACTCAAGAGA TTAAGTCTGT TATCGATAAT
TTGCAGGCTC AATCGAAAGA AACTGTGTCT GCCATGCATA AAAATACTGA GCTTGCCTCT
GCAGGGCTTG AAAAAACCAG CGTAGCCAGT GAAGCGTTAA AGCAAGTGGT GTTGGACATA
GGCAATATTA CTAATCAAAA CACCCAAGTG GCAGTGGCAA CACAGGAGCA ATCCAATGTG
ATTGGTGAGC TTAATTCCAA TATCAATCGC ATTGCTGATA TGTCGCGTAT GATTGCCGAT
TTCTCCACTC AAACCCAAAG CTCAGTACAG CAATTAGATA CTCAAAAACG CAATCTCACT
CAATTGGTTG GGCAATTTAA AACGTAA
|
|---|
| Protein sequence | MTLNFQNFKI RHLLILIISF ALIFLAASTT LLNRSLFFAS AEKSIEEELL PNQLAKIEAQ
IRYQLSTPIE LSKAMSQNTF ILDWVMAQEP AAQQQQVIDY LAHVQKENKA GVVYWVSNVS
NQYLTNNGVY KTMSQSDEKD AWFYRFLSGN KTFEISFDFA ANGVDLTAYV NYRVKYNGRD
LGVVGIGYSV NELSKNILNN KVGETGYVFI TNDAGDIIIH PTLNQLESKK LRQNKGFTDI
ADSLLKPDAS YSFNETKLKG ENVYVASVGI PELNWKILGV LPSEEPMASI RSTLLKSSAL
NLVIVIFFIL VMVNLASRIT LPITEIGERL MTMAKAGGDL THQLNQDRRD ELGTLAQGFN
AIISKVRSIM VDIKTLEDQM THSFNDMRHM SSEINNCVSA QQQESDSVAA AATQMTHSIQ
SVSDLANESA ANTEMTQQKI IQVNQGVLEC NQLMQSLHVS NESTQEKISQ LAAQTLTISS
VVDVISSISE QTNLLALNAA IEAARAGEQG RGFAVVADEV RTLAARTQKS TQEIKSVIDN
LQAQSKETVS AMHKNTELAS AGLEKTSVAS EALKQVVLDI GNITNQNTQV AVATQEQSNV
IGELNSNINR IADMSRMIAD FSTQTQSSVQ QLDTQKRNLT QLVGQFKT
|
|---|
| |