More than 300 homologs were found in PanDaTox collection
for query gene Sden_2239 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_2239  chemotaxis sensory transducer  100 
 
 
648 aa  1323    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0596  methyl-accepting chemotaxis sensory transducer  35.05 
 
 
640 aa  345  2e-93  Shewanella loihica PV-4  Bacteria  normal  normal  0.270432 
 
 
-
 
NC_008700  Sama_0552  putative methyl-accepting chemotaxis sensory transducer  34.66 
 
 
648 aa  345  2e-93  Shewanella amazonensis SB2B  Bacteria  normal  0.283806  decreased coverage  0.00439756 
 
 
-
 
NC_003910  CPS_1439  methyl-accepting chemotaxis protein  33.95 
 
 
641 aa  341  2e-92  Colwellia psychrerythraea 34H  Bacteria  normal  0.336763  n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  32.86 
 
 
640 aa  332  1e-89  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  31.13 
 
 
645 aa  313  5.999999999999999e-84  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  31.66 
 
 
645 aa  304  3.0000000000000004e-81  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  31.66 
 
 
645 aa  303  6.000000000000001e-81  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  30.77 
 
 
645 aa  302  1e-80  Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  31.08 
 
 
645 aa  300  5e-80  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  31.68 
 
 
643 aa  298  1e-79  Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  29.12 
 
 
642 aa  284  3.0000000000000004e-75  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  30.41 
 
 
638 aa  285  3.0000000000000004e-75  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  30.86 
 
 
638 aa  285  3.0000000000000004e-75  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  28.85 
 
 
638 aa  283  5.000000000000001e-75  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_008322  Shewmr7_3750  methyl-accepting chemotaxis sensory transducer  29.42 
 
 
638 aa  283  6.000000000000001e-75  Shewanella sp. MR-7  Bacteria  normal  0.666265  normal  0.186245 
 
 
-
 
NC_008577  Shewana3_0272  methyl-accepting chemotaxis sensory transducer  29.12 
 
 
638 aa  282  2e-74  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00090491  hitchhiker  0.000000349734 
 
 
-
 
NC_008321  Shewmr4_0271  methyl-accepting chemotaxis sensory transducer  29.12 
 
 
638 aa  280  8e-74  Shewanella sp. MR-4  Bacteria  normal  0.758035  hitchhiker  0.0000678809 
 
 
-
 
NC_009665  Shew185_0275  methyl-accepting chemotaxis sensory transducer  29.29 
 
 
638 aa  278  2e-73  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0282  methyl-accepting chemotaxis sensory transducer  29.29 
 
 
641 aa  278  2e-73  Shewanella baltica OS155  Bacteria  normal  0.0149105  n/a   
 
 
-
 
NC_009997  Sbal195_0283  methyl-accepting chemotaxis sensory transducer  29.29 
 
 
638 aa  278  2e-73  Shewanella baltica OS195  Bacteria  normal  0.411591  normal 
 
 
-
 
NC_013457  VEA_001273  methyl-accepting chemotaxis protein  30.82 
 
 
638 aa  278  2e-73  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0279  methyl-accepting chemotaxis sensory transducer  29.29 
 
 
638 aa  277  4e-73  Shewanella baltica OS223  Bacteria  normal  0.983838  normal 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  28.59 
 
 
639 aa  275  2.0000000000000002e-72  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_009438  Sputcn32_0387  methyl-accepting chemotaxis sensory transducer  28.66 
 
 
638 aa  269  1e-70  Shewanella putrefaciens CN-32  Bacteria  normal  0.408395  n/a   
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  29.01 
 
 
636 aa  266  8e-70  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05150  adenylyl cyclase class-3/4/guanylyl cyclase  30.41 
 
 
650 aa  260  4e-68  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  28.31 
 
 
636 aa  259  1e-67  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_1102  methyl-accepting chemotaxis protein  28.92 
 
 
638 aa  254  4.0000000000000004e-66  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C1067  methyl-accepting chemotaxis sensory transducer  29.68 
 
 
634 aa  250  5e-65  Burkholderia xenovorans LB400  Bacteria  normal  0.318926  normal 
 
 
-
 
NC_010515  Bcenmc03_3785  methyl-accepting chemotaxis sensory transducer  28.35 
 
 
620 aa  243  1e-62  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0060774  normal  0.0147123 
 
 
-
 
NC_011138  MADE_00464  methyl-accepting chemotaxis protein  28.19 
 
 
636 aa  241  4e-62  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3723  HAMP domain-containing protein  27.95 
 
 
628 aa  240  5.999999999999999e-62  Cupriavidus metallidurans CH34  Bacteria  normal  0.21159  normal  0.539738 
 
 
-
 
NC_008543  Bcen2424_3736  methyl-accepting chemotaxis sensory transducer  28.53 
 
 
620 aa  238  2e-61  Burkholderia cenocepacia HI2424  Bacteria  normal  0.455432  normal  0.0212994 
 
 
-
 
NC_008061  Bcen_4628  methyl-accepting chemotaxis sensory transducer  28.53 
 
 
620 aa  238  3e-61  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0130  methyl-accepting chemotaxis sensory transducer  28.19 
 
 
671 aa  227  6e-58  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2357  methyl-accepting chemotaxis sensory transducer  28.31 
 
 
620 aa  226  9e-58  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5471  methyl-accepting chemotaxis sensory transducer  27.24 
 
 
620 aa  224  3e-57  Burkholderia ambifaria AMMD  Bacteria  normal  0.407039  normal 
 
 
-
 
NC_010086  Bmul_4997  methyl-accepting chemotaxis sensory transducer  26.38 
 
 
620 aa  223  6e-57  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.245568 
 
 
-
 
NC_010552  BamMC406_3618  methyl-accepting chemotaxis sensory transducer  27.96 
 
 
620 aa  220  6e-56  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0344374  normal 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  30.44 
 
 
631 aa  219  1e-55  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2448  methyl-accepting chemotaxis protein  32.29 
 
 
646 aa  215  1.9999999999999998e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.718596  n/a   
 
 
-
 
NC_009831  Ssed_3827  methyl-accepting chemotaxis transducer  35.23 
 
 
695 aa  215  1.9999999999999998e-54  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000221184 
 
 
-
 
NC_009783  VIBHAR_01753  hypothetical protein  39.18 
 
 
545 aa  214  2.9999999999999995e-54  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2220  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  31.66 
 
 
646 aa  212  2e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.071358  normal  0.520396 
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  30.41 
 
 
630 aa  209  9e-53  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  31.91 
 
 
630 aa  208  3e-52  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  29.57 
 
 
648 aa  207  4e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  31.33 
 
 
630 aa  207  5e-52  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  32.3 
 
 
540 aa  206  7e-52  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  38.79 
 
 
541 aa  206  9e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  38.07 
 
 
545 aa  206  1e-51  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  34.52 
 
 
622 aa  206  1e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  30.91 
 
 
630 aa  205  2e-51  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2719  methyl-accepting chemotaxis sensory transducer  28.23 
 
 
655 aa  205  2e-51  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.91 
 
 
630 aa  205  2e-51  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  30.91 
 
 
630 aa  204  3e-51  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  31.9 
 
 
630 aa  205  3e-51  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  30.9 
 
 
630 aa  204  3e-51  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  31.14 
 
 
630 aa  205  3e-51  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  30.38 
 
 
632 aa  203  7e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
558 aa  203  7e-51  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_55960  chemotactic transducer PctC  31.3 
 
 
632 aa  203  9e-51  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.289325  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  30.7 
 
 
629 aa  202  1.9999999999999998e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  31.69 
 
 
623 aa  202  1.9999999999999998e-50  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_4580  methyl-accepting chemotaxis sensory transducer  30.15 
 
 
648 aa  201  1.9999999999999998e-50  Pseudomonas putida W619  Bacteria  normal  normal  0.0108713 
 
 
-
 
NC_002947  PP_0584  methyl-accepting chemotaxis transducer  27.59 
 
 
647 aa  201  3e-50  Pseudomonas putida KT2440  Bacteria  normal  0.77697  normal  0.644217 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.02 
 
 
630 aa  201  3e-50  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_009665  Shew185_3428  methyl-accepting chemotaxis sensory transducer  29.24 
 
 
667 aa  200  7e-50  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  32.88 
 
 
625 aa  200  9e-50  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_009052  Sbal_0934  methyl-accepting chemotaxis sensory transducer  29.07 
 
 
667 aa  199  1.0000000000000001e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3356  methyl-accepting chemotaxis sensory transducer  29.24 
 
 
667 aa  199  2.0000000000000003e-49  Shewanella baltica OS223  Bacteria  normal  0.386472  normal 
 
 
-
 
NC_009512  Pput_0623  methyl-accepting chemotaxis sensory transducer  27.44 
 
 
647 aa  199  2.0000000000000003e-49  Pseudomonas putida F1  Bacteria  normal  0.494937  normal 
 
 
-
 
NC_009997  Sbal195_3553  methyl-accepting chemotaxis sensory transducer  29.07 
 
 
667 aa  199  2.0000000000000003e-49  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  34.96 
 
 
637 aa  198  2.0000000000000003e-49  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008700  Sama_2528  putative methyl-accepting chemotaxis sensory transducer  29.87 
 
 
665 aa  198  2.0000000000000003e-49  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  30.51 
 
 
629 aa  199  2.0000000000000003e-49  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4431  chemotaxis sensory transducer, Cache sensor  31.6 
 
 
629 aa  198  3e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0984  methyl-accepting chemotaxis sensory transducer  29.58 
 
 
667 aa  197  4.0000000000000005e-49  Shewanella sp. MR-7  Bacteria  normal  normal  0.869835 
 
 
-
 
NC_013457  VEA_001423  methyl-accepting chemotaxis protein  31.26 
 
 
623 aa  197  4.0000000000000005e-49  Vibrio sp. Ex25  Bacteria  normal  0.896179  n/a   
 
 
-
 
NC_008577  Shewana3_0948  methyl-accepting chemotaxis sensory transducer  29.04 
 
 
667 aa  197  5.000000000000001e-49  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  29.5 
 
 
628 aa  197  7e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  30.04 
 
 
630 aa  196  8.000000000000001e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0946  methyl-accepting chemotaxis sensory transducer  28.87 
 
 
667 aa  196  1e-48  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
638 aa  196  1e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  33.26 
 
 
548 aa  195  2e-48  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_007954  Sden_0911  chemotaxis sensory transducer  33.17 
 
 
705 aa  195  2e-48  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000403524  n/a   
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  36.97 
 
 
545 aa  196  2e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  37.99 
 
 
636 aa  195  2e-48  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_012918  GM21_0525  methyl-accepting chemotaxis sensory transducer with Cache sensor  27.07 
 
 
632 aa  194  3e-48  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  31.94 
 
 
554 aa  195  3e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  35.59 
 
 
637 aa  194  4e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  30.19 
 
 
626 aa  194  4e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  30.08 
 
 
628 aa  194  4e-48  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.06 
 
 
628 aa  194  4e-48  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_009456  VC0395_0185  methyl-accepting chemotaxis protein  34.73 
 
 
770 aa  194  5e-48  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0604  methyl-accepting chemotaxis sensory transducer  27.01 
 
 
641 aa  194  5e-48  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.471742  n/a   
 
 
-
 
NC_010506  Swoo_3605  methyl-accepting chemotaxis sensory transducer  28.35 
 
 
666 aa  194  6e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  0.644417  normal 
 
 
-
 
NC_009438  Sputcn32_0950  methyl-accepting chemotaxis sensory transducer  29.24 
 
 
667 aa  194  6e-48  Shewanella putrefaciens CN-32  Bacteria  normal  0.231949  n/a   
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  32.84 
 
 
554 aa  193  7e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
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