| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0581 |
|---|
| Symbol | |
|---|
| ID | 4278750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 673789 |
|---|
| End bp | 675453 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638133339 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_749280 |
|---|
| Protein GI | 114561767 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAGAT CTTCCCTACG CAATAAACTA CTGGGGTTAT CGTTAATTCC ACTATCGTTG
ATCCTCATTG TACTACTGAG TATTTTTTAT GTTAATGAAG AATCGTCTTT AACCAAGGAT
ATTGATAACT TTCGCAGTGA ATTAATTTCA GAGCGTAAAA ACCAACTAAA AGAAGCTGTT
CAGATTGCAC AAGGAGTCGT TGAGTATCAA CTTGCTTTGG GGAGCAATGG TAATGTCAAT
GGAGCCTTAC GAGATTTACG CTTTGGCAGT GCAGGCTATT TCTTTATGTA TGATGATGCC
GGCGTCAATA TTTTTCATCC GACTATGCCT GAACTTGAAG GCCAAAACAA AATTGATATG
GCCGACCCTA ATGGAACCAA AATTATTGTT GGGCTATTAG ATGCGGCTAA ATCGGGTACT
GGTAATTTTT CTTATTATTA TAAAAAACCG GGTAGCGAGC AGCTTGTTGA AAAACTCGGC
TTCGCAGTAA TGATCCCCAA TACCAATTGG ATGTTAGGCT CGGGCGCTTA TATTGATGAT
ATTGAAGAGT CTATTGTTGG TTATGAAACT TATAAAACAG AAGAGATGCA TCAAAAAGCA
TTCATGTTCC TATTAATTGC TTTAGGTCTT ACTGGTATTA CTGCTTTTGG CGTGGTGCTG
ATGGCCCATA AAATGGTGGT GCCAATTCAA AATATGGCTA CATCGCTTAA TGACATCGCT
AAAGGTGAAG GTGATTTAAC CAAACGTTTA GATATCACTA GCATCGATGA AATTGGGCAG
TTAGGCAGCG CATTTAATCT GTTCATCGAC AAATTACAGC ATATTATGGG TGATGTTGCT
GGTGCGACCG ACAGGGTTAA GCAAGCAGCT CAGAGTATTA ATGGTCAAAC AGTGTCAATG
ACAGAACAAC TCTATAATCA CAATAATGAA ATTGACCAAA TTGTCACCGC AATCACAGAA
ATGTCGGCGA CAGCACATGA CGTGGCCCAT AATACTAATA TGGTAGCGGA AGCCACACAT
GCTGCCTCTG ATAATGTTAC GAAAGCGCAA GATTGTGTCG ATACCTCATT AACGGAAGTG
TCTAATTTAA TGAGTCAAAT TGACAATGCT GCGGCCAATG TGAAGTCATT AAGTGAACAA
TCTAAGAAAA TTAACTCGGT GCTAAGTGTG ATTGGTGGGA TTGCTGATCA AACCAATTTA
CTGGCATTAA ATGCGGCAAT TGAAGCCGCG CGAGCCGGCG AGCAAGGTCG AGGTTTTGCG
GTTGTTGCTG ATGAAGTGAG AAACTTGGCC AGTCGAACCC AAGCCAGCAC GGTTGAAATT
AATGAAATGC TGTCTGAACT GCATAAGCTA GTGACCCAAA CGGTACAAAC TATGGAAGAA
AGCCAAGTGA GTTGTTTGAG TTCGGTGGAG TCTTCTAGAG CGATTTCTGA AAGTTTAGGC
GCAGTAACAT CGTCAGTGAC CAGCATTAAT GACATGAGTA CTCAAATAGC CACCGCTGCA
ACGGAACAAA GTTCTGTGAC CGAAGAAATT AATCGTAATA TCAATTCAGT GCAAGAGATT
GTTAATACGT TATTGGTGGC CAGTCAAGAT GCGTCCGGTA TGAGTAAAAC CGTTGCGGAT
GATGGTCAGA CGTTAGCGGA GTTAGTGGGT CAATTTAAAA TATAA
|
|---|
| Protein sequence | MLRSSLRNKL LGLSLIPLSL ILIVLLSIFY VNEESSLTKD IDNFRSELIS ERKNQLKEAV
QIAQGVVEYQ LALGSNGNVN GALRDLRFGS AGYFFMYDDA GVNIFHPTMP ELEGQNKIDM
ADPNGTKIIV GLLDAAKSGT GNFSYYYKKP GSEQLVEKLG FAVMIPNTNW MLGSGAYIDD
IEESIVGYET YKTEEMHQKA FMFLLIALGL TGITAFGVVL MAHKMVVPIQ NMATSLNDIA
KGEGDLTKRL DITSIDEIGQ LGSAFNLFID KLQHIMGDVA GATDRVKQAA QSINGQTVSM
TEQLYNHNNE IDQIVTAITE MSATAHDVAH NTNMVAEATH AASDNVTKAQ DCVDTSLTEV
SNLMSQIDNA AANVKSLSEQ SKKINSVLSV IGGIADQTNL LALNAAIEAA RAGEQGRGFA
VVADEVRNLA SRTQASTVEI NEMLSELHKL VTQTVQTMEE SQVSCLSSVE SSRAISESLG
AVTSSVTSIN DMSTQIATAA TEQSSVTEEI NRNINSVQEI VNTLLVASQD ASGMSKTVAD
DGQTLAELVG QFKI
|
|---|
| |