| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3705 |
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| Symbol | |
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| ID | 5610856 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4509140 |
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| End bp | 4510765 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934658 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001475437 |
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| Protein GI | 157376837 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0963791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAACT TACAGATTAA ACAAAAAATG ACACTGGGAT TGTTAGTCCC GTTAATTCTA
TTAATCAGCA TCTGTTTTTT AGCTGTTAAC ATGATGGGGA AGATCGAAGC CGGTGTCAGC
AGCATATATA ACGACAGGGT CGTGCCTCTG GAAGACCTGA AAATTATCGG CGATGACTAT
GCGGTCTCGG TTATCGATGC CGTCAATAAG GCCAATGCCG GTATGTTTAG TGCTGGTGAA
GCAAGCCGTG CTATGACTGA ATCCAGCCGA AATATTAGTG AAAAATGGGA TGGCTACATG
GCGACAACCT TGACCGATGA GGAGTCCAGG TTAGCTAAGG AAGCCAATCG ATTATTCACG
CCAGCCAATC AAGCAATCTC TCAACTTGTT AGTAAGCTCA ATAGCATGCA AGGGGCGGCT
ACTGGTCAGT TGAATGATGA TATTGCCCCA CTCTACGATG TGATAGACCC TATCAGCGGA
AAAATTGCTG AGCTGGTCAG CCTTCAGTTA AGGGTCGCTG GCGAGGAGAA AGACAAGGTA
GATGAGATTT ACTCATCTTC GATGAAGATT TTTATCGTCT TGACCCTGAT TGCCATAGTA
GCGAGTGTCT TGATTGGCCT CTGGGTGACA AAGGCCGTGA TGCGTCCCAT AGATAATATT
GTTACCACGT TGAACACCGT CCGGGTCGAT TCTGATCTGA CTGTGAAATT TAAGACCTTT
AATGACGATG AGCTGGGGCA GATCTCGACC AACCTGACCC TGGTGATTGA GCATCTTCGT
GGCATTCTTA ACTCTATTGC ACTCGCTGCC AATACTGTCG GAGATTCGAC TGTAAAGTTG
AGTGAGTTTA CTCAGCAAAC CAATGACAGA ATGCATCAGC AGCAATCGGA AACTGAGCAG
ACTGCAGCGG CGATGAATGA GATGACGGCA ACTGTTGCCG AGGTGGCGCA AAGCGCGACT
AACGCCGCCG ATTCCGCCAA AGATGCTGAA GGCAATGCGA CTAAAGGTAA TGGCATCGTT
CAGCAATCGG TTTCCAGCAT GTCTCAGCTC TCTAAGCAGA TAGAGCAAAC CTCTGAGGTG
ATCACCCATC TGGCCAGTGA GAGTCAAAAT ATCGGTAGTG TTCTGGATGT GATCAAGGGC
ATCGCCGAGC AGACAAACCT GTTGGCGTTA AATGCTGCCA TTGAGGCGGC CCGTGCCGGT
GAACAGGGAC GAGGCTTCGC GGTGGTGGCC GATGAGGTGA GAACCTTGGC ACAGAGAACC
CAGGAATCGA CCCAAGAGAT TGAATCTATG ATCGATGGTT TACAAAAAGG GGTTCAGGAA
GCCGTAGGCG CCATGAAGGT GGGTACAGAG CAGGTTTATG ATGCCAATGA AAAAGCCAAC
ATGGCCGGTG AAGCGCTAAA TGAGATTGTA CTCTCCGTCG ATAATATCAG TAACATGAAT
ACTCAGATCG CCACGGCAGC CGAAGAGCAA AGCAGTGTCG CCGAAGACAT AAACCGAAGT
ATCATTGCCA TCAGTGATAT CGCGCAAACC TCTACCACGG CGGCTCAAGA GCTGACGAGT
TCGGTGGAAG AGCTAACCAG CCTGTCTGAA AGTATGCGTG AACAGGTGAG CCAATTTAAG
CTCTAG
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| Protein sequence | MVNLQIKQKM TLGLLVPLIL LISICFLAVN MMGKIEAGVS SIYNDRVVPL EDLKIIGDDY
AVSVIDAVNK ANAGMFSAGE ASRAMTESSR NISEKWDGYM ATTLTDEESR LAKEANRLFT
PANQAISQLV SKLNSMQGAA TGQLNDDIAP LYDVIDPISG KIAELVSLQL RVAGEEKDKV
DEIYSSSMKI FIVLTLIAIV ASVLIGLWVT KAVMRPIDNI VTTLNTVRVD SDLTVKFKTF
NDDELGQIST NLTLVIEHLR GILNSIALAA NTVGDSTVKL SEFTQQTNDR MHQQQSETEQ
TAAAMNEMTA TVAEVAQSAT NAADSAKDAE GNATKGNGIV QQSVSSMSQL SKQIEQTSEV
ITHLASESQN IGSVLDVIKG IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRTLAQRT
QESTQEIESM IDGLQKGVQE AVGAMKVGTE QVYDANEKAN MAGEALNEIV LSVDNISNMN
TQIATAAEEQ SSVAEDINRS IIAISDIAQT STTAAQELTS SVEELTSLSE SMREQVSQFK
L
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