| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3827 |
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| Symbol | |
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| ID | 5613275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4664317 |
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| End bp | 4666404 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934781 |
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| Product | methyl-accepting chemotaxis transducer |
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| Protein accession | YP_001475559 |
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| Protein GI | 157376959 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000221184 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATTCAAT TTTCCAGTAT TCGGCATCAG ATATTACTCT TTGGCTCTGC AAGTTTGCTT
GCAGTCACCT TAGCTATCAT CGGCTACGGC TACTTTTCCA ACCAATCTCT GCGACATGAA
GTCCACGACA GCGTGTTGAA CCAAGCTCAA GATCAAGTCA TAGAGAATAT TAATTTATCC
GCCCGGCAAG AGGCATTAAA AATCAATGCG GCATTCGACC ATGCCATGGA TATTGCGACC
TCGGTTGCAG GTGGATTATT TCCACAAGCT CCCGGTCTTA GCCGCGCGCA AGTCAACAGC
ATGCTTAAGA ATCTGGTCGA AAATAATCAT GATATTTTAG GCATATATAC AGGATGGGAA
GCCAACCGAT TCGATGGACT CGATAGCGGT AATACCGACA ACCGCGACTC TCTACCCGGT
GGTAATTTCG CCCCCTACTG GACCCGTTCA GCATCAGGTA AAATTGATAT TCAACCTCTA
AGCGACTTCT ATTCAGAAAA GCTCACCGCC ACGGGGATCA GAAGCTCAGA GTGGTATCTG
TGCCCTATGG AGAGTCGCTC GCCCTGCGTT ATTGATCCCG CCTCCTATGA AGTCCAGGGA
GTCGATACGC TGTTAAGCTC GTTTGTCGCG CCAGTTATAC ATGACGGTCA ATATGTCGGT
ATGGTCGGTG TCGATTACTC ACTAAACTTC TTGCAGCAAC TAGCAACACA GGCCGCCGAT
AACCTTTTTA ACGGCGCCTC AAGAGTGATA ATCCTCAGCC CCAGAGGGCT TATCAGCGCC
GATAGCCGCA ATAAGAACAA TATTAGCAAG TCAGCCAACA GCTCAGATAT TGCCCAGCTA
CTTACAGCCA GACAAAAACA GCAAGCTTCG ATCACAGATA GCAGTATCAT CGCCAGTAAA
ACTTTTGTCG TCACAGGTAC AAATACTCAG TGGGAAATTT TAATCCAGGT CCCCAAAGAG
CTGGCACTAG CTGAGGCCAA TGCCATTGTT GAACAGCTTG AAACGGGCTT TGCCGCAAAT
CTTAGCGGAC AACTCCTCGT AGGTTGTATC GCCGCCATTT TTGGCATGCT ACTCATCTGG
ATCATGTCAG GCTCAATTAA TCGACCTATT CGTGAGTTAG TCGACGTGGT TGCCAACTTA
ACTCAATCGG GTGGCGACTT AACCCAGGAG ATAAAAATAT CCCGTAGAGA TGAAACTGGC
CAGCTCGCCA CTCACCTCAA TACCTTTATC GCTAATGTAC GCTCGATCGT TTCGGACGTC
GCCAATAGCA TGAGTGAACT CACCCACAGC GCCGAGCGCA ATGCGGCCCT TTCTGAATCT
GGCAGGGAAC AGATCAGCAC TCAACAGATG GAGATAGAAC AGGTCGTTAC CGCTACCAAT
GAGATGTCAT CGACCGCCCA CAGTGTCTCA GATAATGCTC AGGTAACAGC TGACTCAGTT
TCAACCACCC AAGAGTCTGT TTCTAAAGGC CAAGAGGTGG TTCAAGCCAA TGCAGAGGGG
TTGCAGTCTC TCTCTGAACA CGTCAACCAC GCATCTAATG AGATCATCGA GTTAGAGAAG
CAAACTGAGA GTATTGGTTC CATTCTGGAT GTTATTCGCA ATATCTCAGA GCAAACGAAT
CTACTGGCAC TCAATGCGGC TATTGAGGCT GCAAGAGCCG GCGAACAAGG CCGAGGCTTT
GCTGTGGTTG CCGATGAAGT AAGAGTGCTG GCCACTCGAA CCGCCGACTC CACCGATGAA
ATACAGCATA TGATTGATGC GCTTCGAAGT AAGAGTAAGC AAGCTGTGAG TACCATGAGT
GAAAGCAGAG AACTGAGTCA AACCTGCTTA ACTCATGCAA ATCAAGCCGT AGAAGAACTC
AATGAAGTGA ATAATCAGAG TAGTAAGATC CAAGATATGG CGCATCAGAT TGCCAGTGCG
GCAGAGGAAC AAGCGGCAGT GACCGAAGAG GTAAACCGCA ATATTGTCGC CATCAATGAC
GCTGCAGAGT CTTTGGCAGA AGGTGCTAAT GCAGCACAAG AGGAGAGTAC AAGTTCAGCC
AGACTCGTCG ATGAAGTTAA CGAAAAAATT AATCATTTCC GCTACTGA
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| Protein sequence | MIQFSSIRHQ ILLFGSASLL AVTLAIIGYG YFSNQSLRHE VHDSVLNQAQ DQVIENINLS
ARQEALKINA AFDHAMDIAT SVAGGLFPQA PGLSRAQVNS MLKNLVENNH DILGIYTGWE
ANRFDGLDSG NTDNRDSLPG GNFAPYWTRS ASGKIDIQPL SDFYSEKLTA TGIRSSEWYL
CPMESRSPCV IDPASYEVQG VDTLLSSFVA PVIHDGQYVG MVGVDYSLNF LQQLATQAAD
NLFNGASRVI ILSPRGLISA DSRNKNNISK SANSSDIAQL LTARQKQQAS ITDSSIIASK
TFVVTGTNTQ WEILIQVPKE LALAEANAIV EQLETGFAAN LSGQLLVGCI AAIFGMLLIW
IMSGSINRPI RELVDVVANL TQSGGDLTQE IKISRRDETG QLATHLNTFI ANVRSIVSDV
ANSMSELTHS AERNAALSES GREQISTQQM EIEQVVTATN EMSSTAHSVS DNAQVTADSV
STTQESVSKG QEVVQANAEG LQSLSEHVNH ASNEIIELEK QTESIGSILD VIRNISEQTN
LLALNAAIEA ARAGEQGRGF AVVADEVRVL ATRTADSTDE IQHMIDALRS KSKQAVSTMS
ESRELSQTCL THANQAVEEL NEVNNQSSKI QDMAHQIASA AEEQAAVTEE VNRNIVAIND
AAESLAEGAN AAQEESTSSA RLVDEVNEKI NHFRY
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