Gene Psyr_2220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2220 
Symbol 
ID3367735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2579677 
End bp2581617 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content60% 
IMG OID637652570 
Producthistidine kinase, HAMP region:Cache: chemotaxis sensory transducer 
Protein accessionYP_235301 
Protein GI66045460 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.071358 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.520396 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATCA AACAAAAATT GACGTGGGCG TTCGCAGTCA TTGCGTGCTT GCCCATATTA 
GTCGTCGCCG CCATCGTGGT CGTGAACCTG CGTGACAAGG CGACCAGTGA TTTCGTGGAC
AGCAGCGCGC GTGAAATTCG CCAGGTCGAC AACGCCATGC AGCTGTTTTT CGACGGCATT
ACGCAGAACG TCAATTACAT CGCGGCGCAC CCGCTGATCG CCGGGGCGAG CGACGATTTC
CGCAACTACA TGGGCGCTAC GCCTCCTCCG CAGTCCGAGA ATGACAGGCA GGCGACCGAG
CTGTTCGCCA GTATCGCCAA GGCTCACCCG GCCTACTCCT ACGTCTCTTA TGGTCTGATC
AACGGCAGCT ACATCATGAC GCCGGAAGAC CCGAAAATGA GCAACTACGA CCCGCGTGTG
CGGCCGTGGT ACAAGACGGC AATGGCCAAT GCCGGCAAGA CTGTGCGCAG CGATGCCTAT
TACTGGGCCA ACGACGATGC TGTACTGGTC AGCACCATCC GGGCGATTCC CAACAAACTG
GGCAACCCTG GCGGCGTGGT CAATATCGAC GTATCGCTCA AGCAGCTGAC CAACATCGTC
AAGCAGATCA AACTGGGCGA AAGCGGCTAT CTGATGCTGA TGGAAAAGAA CGGCACGGTG
CTGGTCGATC CCAAACAGCC CGAGCACAAT TTCAAGAAAC TGGGTGAACT GGGCGACGGC
TTCAGCGAGC TGGCGAAAAC CGCCAGTGGT CTGGTCGAGG TGACACTCAA CGGCGAACGT
TACATGGCCA ACGTTTACTC GTCCGAACAA CTGGGCTGGA ACTTCATCGG CCTGATCAAA
CAGGACGAAG TGATGGCCTC GGCCACCCGC CTGACCTGGT TGATCGGCAT CATCGCGGCG
GTGCTGGCGG TGGTCTTTGC GATTGTCGGT GCCAGTTTTG CCCGCGTTAT CGTGCGTCCG
ATCCACAGCG TTTCCAGCGG CCTGGAAGGC ATCGCGGGCG GTGAAGGCGA TCTGACTCAG
AACCTCGCCG TGCGCGGCAA GGATGAAACC GCGCAACTGG CGGGCTGGTT CAACAAGTTC
CTGACCGCGA TTCGCAGCCT GATCCAGCAC ATCGGTCAGG CCGCCGGGAA GATTCTCGAA
GCCTCACACA GCTCGACACG TGTCTCCAAC GACATGGCCG AAGCTGCTGG CCGGCAGCGC
GAAGCGGTGG ATATGGTCTC CACGGCGTTT CATGAAATGG TCGCCACCTC CAATGAAGTC
GCCCGCTCCT GCAGCCAGGC CGCCGACTCG GCAGACAACG GTCAGCAACA GGCGCGTGAA
GGTCAGCGGC AGATCGACGA TGCGGTGCGC AGCGTCGACC AGCTCAGCGA AGAACTCACC
CGCTCGGCCA AGGACATGAC GCAACTGGAA AAAGACAGCG CAGGCATTCA GTCGATCCTC
AACACCATCC GCTCGATTGC CGAGCAGACC AACCTGCTGG CGCTCAACGC CGCCATCGAG
GCAGCACGTG CGGGCGAACA GGGCCGCGGC TTCGCCGTCG TAGCCGACGA AGTCCGCGCA
CTGGCCAAAC GCACCTCGGA CTCGACCGCC GAAATCGACA GCCTGCTGGG CAACCTGGCC
AAACGTACTG CCTCGGTGGC GCAACAGATG CATGCCAGCC TCGACGTGTC GCAGCAGTCG
GTGACCAAGA TCGGACAGGC ACGCAGCAGC TTCGGGCAAA TCCGTGAGTC AGTGGATGTG
ATTCGCGACA TGAACACCCA GATCGCAACT GCCGCCGAAG AACAGCATCA GGTGGCCGAA
GACATCAACC GGCACATCAG CCAGATCCAT GGTGATGCGC AGTTGATCGC TCAACTCTCG
GACTCGGCCC GCGCGGATTC CAGAAGTCTG GAGATGCTGT CCAGCGAACT GGACGGCCTG
GTACGCAAGT TCAAGACCTG A
 
Protein sequence
MNIKQKLTWA FAVIACLPIL VVAAIVVVNL RDKATSDFVD SSAREIRQVD NAMQLFFDGI 
TQNVNYIAAH PLIAGASDDF RNYMGATPPP QSENDRQATE LFASIAKAHP AYSYVSYGLI
NGSYIMTPED PKMSNYDPRV RPWYKTAMAN AGKTVRSDAY YWANDDAVLV STIRAIPNKL
GNPGGVVNID VSLKQLTNIV KQIKLGESGY LMLMEKNGTV LVDPKQPEHN FKKLGELGDG
FSELAKTASG LVEVTLNGER YMANVYSSEQ LGWNFIGLIK QDEVMASATR LTWLIGIIAA
VLAVVFAIVG ASFARVIVRP IHSVSSGLEG IAGGEGDLTQ NLAVRGKDET AQLAGWFNKF
LTAIRSLIQH IGQAAGKILE ASHSSTRVSN DMAEAAGRQR EAVDMVSTAF HEMVATSNEV
ARSCSQAADS ADNGQQQARE GQRQIDDAVR SVDQLSEELT RSAKDMTQLE KDSAGIQSIL
NTIRSIAEQT NLLALNAAIE AARAGEQGRG FAVVADEVRA LAKRTSDSTA EIDSLLGNLA
KRTASVAQQM HASLDVSQQS VTKIGQARSS FGQIRESVDV IRDMNTQIAT AAEEQHQVAE
DINRHISQIH GDAQLIAQLS DSARADSRSL EMLSSELDGL VRKFKT