| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3856 |
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| Symbol | |
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| ID | 5611648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4704034 |
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| End bp | 4705956 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934810 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001475588 |
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| Protein GI | 157376988 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.825575 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAAAAC TGAATATTCG CCGCAAAGTG GTCTTAACGA CCTTAGCTTC CGTTGTACTT
TCCATACTGA TCATCAGCAT CTATTCGCTC AGTACCAGCC GTAGTATTAT CCTCGAAAGC
ACCCTGGAGA GAGAGCTGCC GGCTGTCTTA GGCGAGGTAG CTAACGACAT CCACGCCCAA
CTCTTGATGC CGATAACGAT CAGCAAGGTG ATGGCAAATA ACATCGACTA TCAGGATATA
ATTCGTCGGG GGGACACCCC GGATACCCAT GAGGCGATCG ACAATTACCT CACTAATATC
CAGCAAAAGT TTGACACCAT CACCGCCTTT CTGGTCTCGG GCAATAGCGG CCGTTACTTC
ATCCCCGGCG GCATACTGAA AACCATCTCC GAGTCCGACT CGAGTGACCA GTGGTTTTAT
AACTTTATGA AGAGTGGCAA ACAGTACTCC CTCAGTTTAG ATGTCGATGA GTCGAATCAG
ATCCCGACGC TGTTTATTAA CTACCTAATG ACGATTGACG GAAAACCCAG TGCCGTGGCT
GGTGTGGGCC TGTCGCTTTC AAGTATGGCC TCCAGTATTA AACAGTACCA TATTGGCACC
CATGGTCAGG TCTTCCTGGT TGATGGCAGC GGCACCATCA AGATCCACCC CGACAGCGGT
TATAGCGGCA AGCAGTTGAG TAGTTTAGGT GAGATAGATA CTGAATCACT CTTTAAAGAG
CAGGATTTCG CCACCACAGA GTATTCCGAT AATGGCCAAG AGATGTTGGT CGCGAGCCGA
TATCTGCCCG ATATCGGTTG GTATCTTATC GCTCAGATCC CCCGGGATGA GATCTTTGGC
ACCTTAGACG ACGCCACCTG GTCTGTGGTT ATTATGGGCA TCGTGATCGC TCTCTTCTTT
ATGGCTGTCA GCATGTGGCT GATAAACCAC CTGCTCTCTC CCTTTGGAGA GTTGGCCAAG
ATGCTCAAAG CCATTGGCGA GGGTGAAGGC GATCTCACAC TCAGACTCGA TGACTCCCGT
CAGGATGAGA CAGGTAATAT GGCACAGGGC TATAACCATT TCGTCGACTA TCTCAGCCGC
ACCCTGCAGA GCGTATCGGC GACAGGCAAT GATCTCTTTG AGGCCGTCGA CCGTATCGAT
AACCAAGCTA AGCATATGGA GCATGAGATA AACGAGCAGG TGAGCAAGAT AGAGCAGATA
GCCACCGCCA TTCATGAGAT GGGCATGACG GCCGAGGAGA TAGCCGGGAG TGCCAATAAC
GCCGCAGAAA ATGCCTCTGT CGCCGAGGAA GCCGTGGTAC AGGGTAACAG TTCTGTTCAA
AAAACCATTA CCAGTGTGGC AACCATGAGC GAGCAACTGC AAAATACCAG CTCGACCATC
AGCAAACTCG CCGAAGATGC CAGCTCTATC GATACCGTGC TCGAAGTTAT CCGTGGGGTC
TCAGAGCAGA CCAACCTGCT GGCGCTCAAC GCCGCCATCG AGGCCGCCCG AGCAGGCGAA
CAGGGACGAG GGTTTGCCGT AGTCGCCGAT GAGGTCAGAA CATTAGCCTC ACGCAGTCAC
GCCTCAACCG AAGAGATCCG CAATATTATC GAGCAACTGC AGGAGAGAAC CAACGAAGCA
GTAAAAGCAA TTGAGCAGAG CACCGAACTG AGTAGTGACA GCCAGCAGGA AGCAACCTCA
TCGGGTGAGC ATCTGCAAAG CATCTCAGAC AACATCAAGG CGATGAACGA GATGAGCGTA
CAGATAGCCA CCGCAACCGG TGAACAATCG AATGTGGTGG GGGAGATAAA TCCCCATGTC
ACGGCTATCG CCGATATCTC AAGAACCAGT AGTCAGGTAG TGCAACAGAC CTCTGTCGAT
TGTAGCGATC TCAGAGAGAT GGCAGTACAA CTCAATGAGT TGGTGTCACG ATTTAAGTTT
TAA
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| Protein sequence | MLKLNIRRKV VLTTLASVVL SILIISIYSL STSRSIILES TLERELPAVL GEVANDIHAQ
LLMPITISKV MANNIDYQDI IRRGDTPDTH EAIDNYLTNI QQKFDTITAF LVSGNSGRYF
IPGGILKTIS ESDSSDQWFY NFMKSGKQYS LSLDVDESNQ IPTLFINYLM TIDGKPSAVA
GVGLSLSSMA SSIKQYHIGT HGQVFLVDGS GTIKIHPDSG YSGKQLSSLG EIDTESLFKE
QDFATTEYSD NGQEMLVASR YLPDIGWYLI AQIPRDEIFG TLDDATWSVV IMGIVIALFF
MAVSMWLINH LLSPFGELAK MLKAIGEGEG DLTLRLDDSR QDETGNMAQG YNHFVDYLSR
TLQSVSATGN DLFEAVDRID NQAKHMEHEI NEQVSKIEQI ATAIHEMGMT AEEIAGSANN
AAENASVAEE AVVQGNSSVQ KTITSVATMS EQLQNTSSTI SKLAEDASSI DTVLEVIRGV
SEQTNLLALN AAIEAARAGE QGRGFAVVAD EVRTLASRSH ASTEEIRNII EQLQERTNEA
VKAIEQSTEL SSDSQQEATS SGEHLQSISD NIKAMNEMSV QIATATGEQS NVVGEINPHV
TAIADISRTS SQVVQQTSVD CSDLREMAVQ LNELVSRFKF
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