Gene Ssed_3856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3856 
Symbol 
ID5611648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4704034 
End bp4705956 
Gene Length1923 bp 
Protein Length640 aa 
Translation table11 
GC content51% 
IMG OID640934810 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001475588 
Protein GI157376988 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.825575 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAAAC TGAATATTCG CCGCAAAGTG GTCTTAACGA CCTTAGCTTC CGTTGTACTT 
TCCATACTGA TCATCAGCAT CTATTCGCTC AGTACCAGCC GTAGTATTAT CCTCGAAAGC
ACCCTGGAGA GAGAGCTGCC GGCTGTCTTA GGCGAGGTAG CTAACGACAT CCACGCCCAA
CTCTTGATGC CGATAACGAT CAGCAAGGTG ATGGCAAATA ACATCGACTA TCAGGATATA
ATTCGTCGGG GGGACACCCC GGATACCCAT GAGGCGATCG ACAATTACCT CACTAATATC
CAGCAAAAGT TTGACACCAT CACCGCCTTT CTGGTCTCGG GCAATAGCGG CCGTTACTTC
ATCCCCGGCG GCATACTGAA AACCATCTCC GAGTCCGACT CGAGTGACCA GTGGTTTTAT
AACTTTATGA AGAGTGGCAA ACAGTACTCC CTCAGTTTAG ATGTCGATGA GTCGAATCAG
ATCCCGACGC TGTTTATTAA CTACCTAATG ACGATTGACG GAAAACCCAG TGCCGTGGCT
GGTGTGGGCC TGTCGCTTTC AAGTATGGCC TCCAGTATTA AACAGTACCA TATTGGCACC
CATGGTCAGG TCTTCCTGGT TGATGGCAGC GGCACCATCA AGATCCACCC CGACAGCGGT
TATAGCGGCA AGCAGTTGAG TAGTTTAGGT GAGATAGATA CTGAATCACT CTTTAAAGAG
CAGGATTTCG CCACCACAGA GTATTCCGAT AATGGCCAAG AGATGTTGGT CGCGAGCCGA
TATCTGCCCG ATATCGGTTG GTATCTTATC GCTCAGATCC CCCGGGATGA GATCTTTGGC
ACCTTAGACG ACGCCACCTG GTCTGTGGTT ATTATGGGCA TCGTGATCGC TCTCTTCTTT
ATGGCTGTCA GCATGTGGCT GATAAACCAC CTGCTCTCTC CCTTTGGAGA GTTGGCCAAG
ATGCTCAAAG CCATTGGCGA GGGTGAAGGC GATCTCACAC TCAGACTCGA TGACTCCCGT
CAGGATGAGA CAGGTAATAT GGCACAGGGC TATAACCATT TCGTCGACTA TCTCAGCCGC
ACCCTGCAGA GCGTATCGGC GACAGGCAAT GATCTCTTTG AGGCCGTCGA CCGTATCGAT
AACCAAGCTA AGCATATGGA GCATGAGATA AACGAGCAGG TGAGCAAGAT AGAGCAGATA
GCCACCGCCA TTCATGAGAT GGGCATGACG GCCGAGGAGA TAGCCGGGAG TGCCAATAAC
GCCGCAGAAA ATGCCTCTGT CGCCGAGGAA GCCGTGGTAC AGGGTAACAG TTCTGTTCAA
AAAACCATTA CCAGTGTGGC AACCATGAGC GAGCAACTGC AAAATACCAG CTCGACCATC
AGCAAACTCG CCGAAGATGC CAGCTCTATC GATACCGTGC TCGAAGTTAT CCGTGGGGTC
TCAGAGCAGA CCAACCTGCT GGCGCTCAAC GCCGCCATCG AGGCCGCCCG AGCAGGCGAA
CAGGGACGAG GGTTTGCCGT AGTCGCCGAT GAGGTCAGAA CATTAGCCTC ACGCAGTCAC
GCCTCAACCG AAGAGATCCG CAATATTATC GAGCAACTGC AGGAGAGAAC CAACGAAGCA
GTAAAAGCAA TTGAGCAGAG CACCGAACTG AGTAGTGACA GCCAGCAGGA AGCAACCTCA
TCGGGTGAGC ATCTGCAAAG CATCTCAGAC AACATCAAGG CGATGAACGA GATGAGCGTA
CAGATAGCCA CCGCAACCGG TGAACAATCG AATGTGGTGG GGGAGATAAA TCCCCATGTC
ACGGCTATCG CCGATATCTC AAGAACCAGT AGTCAGGTAG TGCAACAGAC CTCTGTCGAT
TGTAGCGATC TCAGAGAGAT GGCAGTACAA CTCAATGAGT TGGTGTCACG ATTTAAGTTT
TAA
 
Protein sequence
MLKLNIRRKV VLTTLASVVL SILIISIYSL STSRSIILES TLERELPAVL GEVANDIHAQ 
LLMPITISKV MANNIDYQDI IRRGDTPDTH EAIDNYLTNI QQKFDTITAF LVSGNSGRYF
IPGGILKTIS ESDSSDQWFY NFMKSGKQYS LSLDVDESNQ IPTLFINYLM TIDGKPSAVA
GVGLSLSSMA SSIKQYHIGT HGQVFLVDGS GTIKIHPDSG YSGKQLSSLG EIDTESLFKE
QDFATTEYSD NGQEMLVASR YLPDIGWYLI AQIPRDEIFG TLDDATWSVV IMGIVIALFF
MAVSMWLINH LLSPFGELAK MLKAIGEGEG DLTLRLDDSR QDETGNMAQG YNHFVDYLSR
TLQSVSATGN DLFEAVDRID NQAKHMEHEI NEQVSKIEQI ATAIHEMGMT AEEIAGSANN
AAENASVAEE AVVQGNSSVQ KTITSVATMS EQLQNTSSTI SKLAEDASSI DTVLEVIRGV
SEQTNLLALN AAIEAARAGE QGRGFAVVAD EVRTLASRSH ASTEEIRNII EQLQERTNEA
VKAIEQSTEL SSDSQQEATS SGEHLQSISD NIKAMNEMSV QIATATGEQS NVVGEINPHV
TAIADISRTS SQVVQQTSVD CSDLREMAVQ LNELVSRFKF