| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0837 |
|---|
| Symbol | |
|---|
| ID | 5613058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 992641 |
|---|
| End bp | 994305 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640931685 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001472576 |
|---|
| Protein GI | 157373976 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAACA TGAGTTTGAA AAATAAACTG TTGTTATTCG CACTGCTTCC TTTGGTGTTA
GTCTTTACCT GTTTGATGGC CCTCTCTTAC CAGATTGAGT CGAGTAATTT AGAGCAAGAT
ATTGTCTCTT TCAGAGAAAA GTTGCTTGAG AGTCGTCAGC ACCAGCTTCA AGAGGAGGTT
GAGATAGCCG TCCAAATCGT GGCTTACCAA CTATCCCTGG GTGAGAGAGG AGATCCGAAA
GCTGCACTGC GTAAAGTTCG TTTCGGTAAG TCGGGCTATT TCTTCATCTA TGATGAGCAG
GGGATCAACA TCTTTCACGG TGCAACGCCT GAGAAAGAGG GGATGAATAA TATTGGGATG
ACAGATCCCA ATGGCAAGAA AGTCATAGTC GGTCTGCTGG ATGCCGCCAG AAGTGGCGAT
GGCATTTTCC ACTATCACCA TAAAAAACCC GGTGTAACCG AGTTGGTGCC TAAGGTGAGT
TATGCCGCGA TGATCCCCAA TACTAACTGG ATGATAGGTA CCGGGGCTTA TATGGATGAT
ATCGAAGCGG AGATCTCCGG TTTCCAACAA ACGCTCACCG AACATATGAA GAGTAAAGCG
ATAACCATAC TGGTTATTAC CTTGGTTTTA GGTTTGCTGA CAGTAGTGGG CGTGCTTATT
GCGGCGCAAC GTATGGTACA CCCCATAAGA AATATGGTGA CCAATTTAGA AGATATTGCC
AAAGGGGAAG GAGATCTTAC TAAGCGACTC GATATTGAGG GGCGTGATGA GATTGCGCAG
CTTGGCCGGG CATTTAACCT GTTTGTCGAC AAGCTGCAGG GGATCATCAG GGATGTCGCC
AATGTCACCC TAGAGGTCAA GAGTGGCGCA GATGATATTA ATACACAGAC ACAGGTGATG
GCTGAGCAGT TGGCTAACCA TAACAATGAG ACTGATCAGG TGGTCACTGC TATCACCGAG
ATGTCAGCGA CCGCGAGTGA GGTAGCACAA AATACTTCTC AAGTGGCTGA AGCAACACTC
GCCGCAACCG GAGATGTGAC CACGGCTCAG GACTGTGTTG ATACTTCATT AACCGAAGTA
TCGTCACTAA TGGCTGAAAT AGACACGGCT GCCGAGCATA TTAACTCCCT GCGTGAACAA
TCTCAGAAAA TTAATAGTGT TTTAACCGTG ATTGGTGGTA TTGCCGAGCA AACTAATCTA
TTGGCGTTAA ATGCAGCCAT AGAGGCGGCG AGAGCCGGTG AGCAGGGGCG AGGTTTTGCC
GTGGTTGCCG ATGAAGTTCG CAGCCTGGCC AGCAGGACTC AGGCCAGCAC ATTAGAGATT
AATGAGATGC TTAGTGAACT TCACAACCTT GTCTCACAAG CTGTGAGTAC CATGGATGCG
AGTCAGCAGA GTTGTTTGCG TTCGGTTGAG TCATCAAGAG CCATCTCTGA GAGTTTGGGT
GCGGTGACAT CGGCCGTGAC GTCGATAAAT GATATGAGTA CGCAGATCGC TACCGCAGCA
ACGGAGCAAA GTTCAGTGAC CGAGGAGATT AATCGTAACG TCTTTGCGAT TCAGGATATC
GTCAATGAGT TGATGAGTTC GAGTCAGAGT ACCTCTGGTG TGAGTCAGAA GCTGGCGCAG
GAGGGAGATA ACCTGGGCGA TCTGGTCGGG CAGTTTAAGG TGTAG
|
|---|
| Protein sequence | MLNMSLKNKL LLFALLPLVL VFTCLMALSY QIESSNLEQD IVSFREKLLE SRQHQLQEEV
EIAVQIVAYQ LSLGERGDPK AALRKVRFGK SGYFFIYDEQ GINIFHGATP EKEGMNNIGM
TDPNGKKVIV GLLDAARSGD GIFHYHHKKP GVTELVPKVS YAAMIPNTNW MIGTGAYMDD
IEAEISGFQQ TLTEHMKSKA ITILVITLVL GLLTVVGVLI AAQRMVHPIR NMVTNLEDIA
KGEGDLTKRL DIEGRDEIAQ LGRAFNLFVD KLQGIIRDVA NVTLEVKSGA DDINTQTQVM
AEQLANHNNE TDQVVTAITE MSATASEVAQ NTSQVAEATL AATGDVTTAQ DCVDTSLTEV
SSLMAEIDTA AEHINSLREQ SQKINSVLTV IGGIAEQTNL LALNAAIEAA RAGEQGRGFA
VVADEVRSLA SRTQASTLEI NEMLSELHNL VSQAVSTMDA SQQSCLRSVE SSRAISESLG
AVTSAVTSIN DMSTQIATAA TEQSSVTEEI NRNVFAIQDI VNELMSSSQS TSGVSQKLAQ
EGDNLGDLVG QFKV
|
|---|
| |