| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0950 |
|---|
| Symbol | |
|---|
| ID | 5081862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1059013 |
|---|
| End bp | 1061016 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640498075 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001182478 |
|---|
| Protein GI | 146292054 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.231949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGATATA TAAAACGTTC TCTAAGTTTG CAGTTGGTTG TGACGATTGT CAGCGCCTTA
GCAGTACTCC TTACCTTAGT TGCCGTTTTG TTGGTAACGA AAGAAAGTAA TAATACTCGT
AAGCAAGTCG ATGAGGATAT TTCGGCACTT GTTGCATTAA AAGCCAATGA AATCAGTGGA
TATTTTATTG CTAAGGGTCA GGTCATCCAC TCCATATTTG CTGAACCGGG TTTGGTGAGT
TGGTTTAGCC AGTATCATGC CCGTGGCAGC AATCTTGCCG CTGATAGCCA ATATCAAAAT
ATTATTCGTT ATTTCAAATC CTTTTCTGAG CGCGATCCCG ATATAAAATC CGTATTTTTT
GGTTCGGCTA ATACGTTTGA ATATTTTGAT CTCAATGGTC GTTTCGATGG CGACCCCAAT
TACTACACCA ATAAACGACC TTGGTGGCAG GAGGCTATCG ACCAACGTGG ACTCTTTGTG
GGCGATCCTG CAGTGGATGC TAACGATGGC TCTATCTCTG CTACGGTTAA AACTCCTGTC
TATGGGGCAA ATGGTGAATT GATTGGTATC GGTGGTATGG ATATTTTGAT CGATACTATT
GGTAAATCCC TGTTAGCACC GATCAAATAT CGCAATTTTG GTCAGGCTTT CCTGATGACC
GATGACGGCA AGCTGGTTTA TTTCCCTGGA TTTTCTGAGC GTTTTCCACC GGGCTCTTTA
GCTAGTCAAG TCGACAGTCA GTTTGAAAAT ACGTCTGGAT TCGCCTTACT AAGACAACAG
ATGCAACGGG AAGCGCAAGG CTTTGCTGAA GTGACGTTTA ATGGCGTGCC ACAGAGAGTC
ACTTTTGTAT CTGTCGGAGG GGATTATCCT AAGCAAAAAT GGCACCTAGC CTTTATGTTA
CCCCATGAGG TAATAGAAGC GCCTGTGACA GCGGCCTTTT GGAATGCGTG TTTAGTTGCT
ATCGGCATTA TGCTGTTAGT CGGAATAACG GTTTGGTTAA TGTTGCTGCC CTTTAGACGT
CAGTTATCTA AGCTATTGGA TGCGATGGAG GATATTGCTG AAGGTGATAG CGATCTTTCT
CAACGTATTC TAATGGATCG AGAAGATGAA CTAGGTAAAC TCGGTGATGC CTTTAACCGC
TTTGCTGAAA AAGTTCAGCA TATGTTATTG CATACCCGCA CGCTAACGCA GGAAGTCGGT
ACAGGGGTGG AAGATGCTCG GCAAGTGTGT GAATTAGCCG TATCTTCAGT GTCATCTCAG
AAACAGCAAA TCGATTCTGT GGCAACCGCA GCGACACAAA TGGCACAGAC GAGCCAAGAG
ATGGCGGTGA GTGCCCAAAG AGCAAATGAT TTTGCACAGA AAGCACAAAC TCAAGCCCAC
GATGGTACTC AGATTGTTTC ACGTGCGACA GAAGGGATGA AAGTACTATC TCTGCAAGTT
ATTGAGGCTG CAAAAGTGAT TAAACACTTA CGTAATAGCT CAGAACAAAT CGGTGAGGTA
TTGAGTGTTA TTCGTCATAT TGCCGAGCAA ACTAATCTAC TGGCGCTCAA TGCGGCTATC
GAAGCGGCCC GTGCGGGTGA ACAAGGCCGT GGCTTTGCTG TGGTGGCAGA TGAAGTGCGT
ACGTTGGCAT CGCGAACCCA AGATTCTACC GCTAATATTC AGGGCATTAT TCAGACATTA
CAACAAAGTG CATTACAGGC AGAACAAGTG ATGGAGTCTG GCGTTGAGCA GGCAAAAGCA
GGTCAGGATC TGACGACTCA AGTGGAGCAA GCATTAAATG ATATCGCAAA TGCCATTGTG
TCTATTCAGC AACAAACCGT AGAAATTACC GTGGCAATTG GTCAACAGGC GGTAGTGGCT
GAGGAAGTGG CGCAAAACGT TGAGAATGTC CGTGGTTTAT CGGATCAATC TTTGTTATCC
AGCCAAGATC TATCGCAAAG TCTACAGGGC TTTGAACATG TAACCCGTAA ACTCACCTTA
AATATTGGGC AATTCAAAAT CTGA
|
|---|
| Protein sequence | MGYIKRSLSL QLVVTIVSAL AVLLTLVAVL LVTKESNNTR KQVDEDISAL VALKANEISG
YFIAKGQVIH SIFAEPGLVS WFSQYHARGS NLAADSQYQN IIRYFKSFSE RDPDIKSVFF
GSANTFEYFD LNGRFDGDPN YYTNKRPWWQ EAIDQRGLFV GDPAVDANDG SISATVKTPV
YGANGELIGI GGMDILIDTI GKSLLAPIKY RNFGQAFLMT DDGKLVYFPG FSERFPPGSL
ASQVDSQFEN TSGFALLRQQ MQREAQGFAE VTFNGVPQRV TFVSVGGDYP KQKWHLAFML
PHEVIEAPVT AAFWNACLVA IGIMLLVGIT VWLMLLPFRR QLSKLLDAME DIAEGDSDLS
QRILMDREDE LGKLGDAFNR FAEKVQHMLL HTRTLTQEVG TGVEDARQVC ELAVSSVSSQ
KQQIDSVATA ATQMAQTSQE MAVSAQRAND FAQKAQTQAH DGTQIVSRAT EGMKVLSLQV
IEAAKVIKHL RNSSEQIGEV LSVIRHIAEQ TNLLALNAAI EAARAGEQGR GFAVVADEVR
TLASRTQDST ANIQGIIQTL QQSALQAEQV MESGVEQAKA GQDLTTQVEQ ALNDIANAIV
SIQQQTVEIT VAIGQQAVVA EEVAQNVENV RGLSDQSLLS SQDLSQSLQG FEHVTRKLTL
NIGQFKI
|
|---|
| |