Gene PSPTO_2448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2448 
Symbol 
ID1184100 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2702812 
End bp2704752 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content60% 
IMG OID637393823 
Productmethyl-accepting chemotaxis protein 
Protein accessionNP_792262 
Protein GI28869643 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.718596 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATCA AACAGAAATT GACGTGGGCT TTCGCAGTGA TTGCGTGTTT GCCCATCGTG 
GTCGTGGCTG CAATTGTAAT TGTGAACCTG CGCGACAAGG CGACCAGCGA CTTTGTCGAC
AGCAGCGGGC GGGAAATTCG TCAGGTCGAC AACGCCATGC AATTGTTCTT CGACGGCATC
ACGCAGAACG TCAACTACAT CGCTGCGCAC CCGCTGATCG CCGGTGCAAG CGATGACTTT
CGTAACTATA TGGGCGCCGC CGCTACCGCG CAGTCGGAAA ACGACAGACA GGCCACCGAG
CTGTTCGCCA GCATTGCCAA GGCCCACCCG GCCTACGCCT ACGTTTCTTA CGGTCTGATC
AACGGCAGCT ACATCATGAC GCCGGACGAC CCGAAAATGA GCAACTACGA CCCGCGTGTC
CGGCCGTGGT ACAAGACCGC AATGGCCAAT GCAGGCAAGA CTGTGCGCAG CGATGCGTAC
TACTGGGCCA ACGATGATGC GGTGCTGGTC AGCACCATCC GGGCGATCCC CAACAAGCTC
GGCAACCCCG GTGGCGTGGT CAACATCGAC GTGTCACTCA AGCAACTGAC CAACATCGTC
AAGCAGATCA AGCTGGGTGA AAGCGGCTAC CTGATGCTGA TGGAAAAGAA CGGCACAGTG
CTGGTCGCCC CCAAACAGCC AGAGCATAAC TTCAAGAAGC TGGGTGAACT GGGCGACGGT
TTCGCCGAAC TGGCAAAAAC CGGCAGTGGT CTGGTCGAGT TGACGCTCAA TGGCGAGCGT
TACATGGCCA ACGTCTACCC TTCCGAGCAA CTGGGCTGGA ACTTTATCGG CCTGATCAAG
CAAGACGAAG TGATGGCCTC GGCCACTCGC CTGACCTGGC TGATCGGCAT CATCGCTGCC
GTGCTGGCGC TGGTGTTCGC GATTGTCGGG GCAAGTTTTG CCAGTGTCAT CGTGCGTCCG
ATCCATAGTG TTTCCACTGG CCTTGAAGGC ATTGCCGGTG GCGAAGGCGA CCTGACCCAG
AACCTCGCCG TGCGTGGCAC CGACGAAACC GCGCAGCTGG CGGGCTGGTT CAACAAGTTC
CTCACTGCAA TTCGCAACCT GATCCAGCAT ATTGGTCAGG CCGCCGGGAA AATTCTCGAG
GCATCGCACA GCTCCACCCG TGTCTCCAAC GACATGGCCG AAGCCGCCGG GCGTCAGCGC
GAGGCGGTGG ACATGGTGTC AACCGCCTTC CATGAGATGG TCGCCACCTC CAACGAAGTC
GCCCGCTCCT GCAGCCAGGC CGCCGATTCC GCCGACAGCG GTCAGCAACA GGCCCGCGAA
GGCCAGCGGC AGATTGATGA TGCGGTGCGC AGCGTTGATC AGTTGAGCGA AGAACTGGCC
CGCTCAGCCA AGGACATGAC CCAGCTGGAA AAAGACAGCA CGGGCATTCA GTCGATTTTG
AACACCATCC GCTCGATCGC CGAACAGACC AACCTTTTGG CCCTCAACGC AGCCATTGAA
GCGGCGCGCG CGGGTGAACA GGGTCGCGGC TTTGCCGTGG TGGCCGACGA AGTTCGCGCG
CTGGCCAAGC GCACCGCCGA CTCTACTGCC GAGATCGACA GCCTGCTGGG CAACCTGGCC
AGACGCACTG CTTCGGTGGC GCAACAGATG CATTCCAGCC TTGAAGTGTC GCAGCAGTCG
GTGACCAAGA TCGGGCAGGC ACGTAGCAGT TTTGGGCAGA TTCGTGAGTC GGTGGATGTG
ATTCGCGACA TGAACACCCA GATCGCAACT GCCGCTGAAG AACAGCATCA GGTCGCCGAG
GACATCAACC GCCACATCAG CCAGATCCAT GGCGATGCTC AGTTGATCGC CGACCTTTCG
GACTCGGCCC GCGCCGACTC CAGAAGCCTG GAGACACTGT CCAGCGAACT CGACGGCCTG
GTGCGCAAGT TCAAGACTTG A
 
Protein sequence
MNIKQKLTWA FAVIACLPIV VVAAIVIVNL RDKATSDFVD SSGREIRQVD NAMQLFFDGI 
TQNVNYIAAH PLIAGASDDF RNYMGAAATA QSENDRQATE LFASIAKAHP AYAYVSYGLI
NGSYIMTPDD PKMSNYDPRV RPWYKTAMAN AGKTVRSDAY YWANDDAVLV STIRAIPNKL
GNPGGVVNID VSLKQLTNIV KQIKLGESGY LMLMEKNGTV LVAPKQPEHN FKKLGELGDG
FAELAKTGSG LVELTLNGER YMANVYPSEQ LGWNFIGLIK QDEVMASATR LTWLIGIIAA
VLALVFAIVG ASFASVIVRP IHSVSTGLEG IAGGEGDLTQ NLAVRGTDET AQLAGWFNKF
LTAIRNLIQH IGQAAGKILE ASHSSTRVSN DMAEAAGRQR EAVDMVSTAF HEMVATSNEV
ARSCSQAADS ADSGQQQARE GQRQIDDAVR SVDQLSEELA RSAKDMTQLE KDSTGIQSIL
NTIRSIAEQT NLLALNAAIE AARAGEQGRG FAVVADEVRA LAKRTADSTA EIDSLLGNLA
RRTASVAQQM HSSLEVSQQS VTKIGQARSS FGQIRESVDV IRDMNTQIAT AAEEQHQVAE
DINRHISQIH GDAQLIADLS DSARADSRSL ETLSSELDGL VRKFKT