Gene PSPTO_2448 details

Gene Information

• Locus tag: PSPTO_2448
• ID: 1184100
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 2702812
• End bp: 2704752
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637393823
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_792262
• Protein GI: 28869643
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.718596
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATCA AACAGAAATT GACGTGGGCT TTCGCAGTGA TTGCGTGTTT GCCCATCGTG 
GTCGTGGCTG CAATTGTAAT TGTGAACCTG CGCGACAAGG CGACCAGCGA CTTTGTCGAC 
AGCAGCGGGC GGGAAATTCG TCAGGTCGAC AACGCCATGC AATTGTTCTT CGACGGCATC 
ACGCAGAACG TCAACTACAT CGCTGCGCAC CCGCTGATCG CCGGTGCAAG CGATGACTTT 
CGTAACTATA TGGGCGCCGC CGCTACCGCG CAGTCGGAAA ACGACAGACA GGCCACCGAG 
CTGTTCGCCA GCATTGCCAA GGCCCACCCG GCCTACGCCT ACGTTTCTTA CGGTCTGATC 
AACGGCAGCT ACATCATGAC GCCGGACGAC CCGAAAATGA GCAACTACGA CCCGCGTGTC 
CGGCCGTGGT ACAAGACCGC AATGGCCAAT GCAGGCAAGA CTGTGCGCAG CGATGCGTAC 
TACTGGGCCA ACGATGATGC GGTGCTGGTC AGCACCATCC GGGCGATCCC CAACAAGCTC 
GGCAACCCCG GTGGCGTGGT CAACATCGAC GTGTCACTCA AGCAACTGAC CAACATCGTC 
AAGCAGATCA AGCTGGGTGA AAGCGGCTAC CTGATGCTGA TGGAAAAGAA CGGCACAGTG 
CTGGTCGCCC CCAAACAGCC AGAGCATAAC TTCAAGAAGC TGGGTGAACT GGGCGACGGT 
TTCGCCGAAC TGGCAAAAAC CGGCAGTGGT CTGGTCGAGT TGACGCTCAA TGGCGAGCGT 
TACATGGCCA ACGTCTACCC TTCCGAGCAA CTGGGCTGGA ACTTTATCGG CCTGATCAAG 
CAAGACGAAG TGATGGCCTC GGCCACTCGC CTGACCTGGC TGATCGGCAT CATCGCTGCC 
GTGCTGGCGC TGGTGTTCGC GATTGTCGGG GCAAGTTTTG CCAGTGTCAT CGTGCGTCCG 
ATCCATAGTG TTTCCACTGG CCTTGAAGGC ATTGCCGGTG GCGAAGGCGA CCTGACCCAG 
AACCTCGCCG TGCGTGGCAC CGACGAAACC GCGCAGCTGG CGGGCTGGTT CAACAAGTTC 
CTCACTGCAA TTCGCAACCT GATCCAGCAT ATTGGTCAGG CCGCCGGGAA AATTCTCGAG 
GCATCGCACA GCTCCACCCG TGTCTCCAAC GACATGGCCG AAGCCGCCGG GCGTCAGCGC 
GAGGCGGTGG ACATGGTGTC AACCGCCTTC CATGAGATGG TCGCCACCTC CAACGAAGTC 
GCCCGCTCCT GCAGCCAGGC CGCCGATTCC GCCGACAGCG GTCAGCAACA GGCCCGCGAA 
GGCCAGCGGC AGATTGATGA TGCGGTGCGC AGCGTTGATC AGTTGAGCGA AGAACTGGCC 
CGCTCAGCCA AGGACATGAC CCAGCTGGAA AAAGACAGCA CGGGCATTCA GTCGATTTTG 
AACACCATCC GCTCGATCGC CGAACAGACC AACCTTTTGG CCCTCAACGC AGCCATTGAA 
GCGGCGCGCG CGGGTGAACA GGGTCGCGGC TTTGCCGTGG TGGCCGACGA AGTTCGCGCG 
CTGGCCAAGC GCACCGCCGA CTCTACTGCC GAGATCGACA GCCTGCTGGG CAACCTGGCC 
AGACGCACTG CTTCGGTGGC GCAACAGATG CATTCCAGCC TTGAAGTGTC GCAGCAGTCG 
GTGACCAAGA TCGGGCAGGC ACGTAGCAGT TTTGGGCAGA TTCGTGAGTC GGTGGATGTG 
ATTCGCGACA TGAACACCCA GATCGCAACT GCCGCTGAAG AACAGCATCA GGTCGCCGAG 
GACATCAACC GCCACATCAG CCAGATCCAT GGCGATGCTC AGTTGATCGC CGACCTTTCG 
GACTCGGCCC GCGCCGACTC CAGAAGCCTG GAGACACTGT CCAGCGAACT CGACGGCCTG 
GTGCGCAAGT TCAAGACTTG A 

 

Protein sequence

MNIKQKLTWA FAVIACLPIV VVAAIVIVNL RDKATSDFVD SSGREIRQVD NAMQLFFDGI 
TQNVNYIAAH PLIAGASDDF RNYMGAAATA QSENDRQATE LFASIAKAHP AYAYVSYGLI 
NGSYIMTPDD PKMSNYDPRV RPWYKTAMAN AGKTVRSDAY YWANDDAVLV STIRAIPNKL 
GNPGGVVNID VSLKQLTNIV KQIKLGESGY LMLMEKNGTV LVAPKQPEHN FKKLGELGDG 
FAELAKTGSG LVELTLNGER YMANVYPSEQ LGWNFIGLIK QDEVMASATR LTWLIGIIAA 
VLALVFAIVG ASFASVIVRP IHSVSTGLEG IAGGEGDLTQ NLAVRGTDET AQLAGWFNKF 
LTAIRNLIQH IGQAAGKILE ASHSSTRVSN DMAEAAGRQR EAVDMVSTAF HEMVATSNEV 
ARSCSQAADS ADSGQQQARE GQRQIDDAVR SVDQLSEELA RSAKDMTQLE KDSTGIQSIL 
NTIRSIAEQT NLLALNAAIE AARAGEQGRG FAVVADEVRA LAKRTADSTA EIDSLLGNLA 
RRTASVAQQM HSSLEVSQQS VTKIGQARSS FGQIRESVDV IRDMNTQIAT AAEEQHQVAE 
DINRHISQIH GDAQLIADLS DSARADSRSL ETLSSELDGL VRKFKT