| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4216 |
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| Symbol | |
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| ID | 5611789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5179280 |
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| End bp | 5181223 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935175 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001475948 |
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| Protein GI | 157377348 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTCTCTT TTCATTTCTG TCACTGTTGT GGAGATAAGC AATTGTTAGG ATTTAGAAAA
TCGCTGATAG CGTCAATGGT GACTCTGGTC GCCCTCTGCC TTTTAATCTC AAATTGGCTC
TCATATATCG AATTAAAAGA GAGCACCATA GCCAATACCA ATGAAAAACT CAGGAGTATT
GCTAAATATG AATCGAACAA CATCGAGGAG TGGTTTACAG AGAAGGCCAA ATCCATCGAT
GCACTAGCCA GCCACTACCA ACAGGGTACC TATAAGGGCA ACTATGCCCA GGCAGCCAGG
CTCTCTACCG ATGTCGGCGG CGTCGCCCGT ATCTATTTCG GCTTCGATGA TGGCTCGGCC
TACTCGACGG AAACCAGCAG CAAGTGGATC GACGGCAAGG CCATACCCGA ACAATACGAT
CCACGCACCC GTCCCTGGTA CCAGCAAGGT AAAGCCACCA CAGCCCTGGA TGTCACCGAT
ATCTATGTCG ATGACGGCAC CGGCCACGAT GTCATCTCTA TCCTGAAAAA TCTCGGTGAT
GGTGTCGTCC TCGGCGATAT CGAGCTCACC TTTCTGGCAG ATGCGGTTAA GGCCGTGGAT
TACCCTGGCG CCGTGGTATT AATTACCGAT CAGACGGGTA AGGTACTGGC ATCTGAATCC
AAACGTCTGA TCTCAGGCAC TCACTTCTCC GATTTTGGCC TACCCGAAGT AGAACGAAAT
ATGCTGTCAC AGGACGAGGT TATGCAGGAA TACACCTTAG ACGGCGTCGA TAAGATCGCA
TTTTCCAAGG CGATCAATCT GGTCAACGGC AAGAAGTGGT ATCTGCTCAT CGGCCTGAAA
AAGTCTGTCG CTTATGCGGC CGTAGACAAG GCACTCAGTA ATGCCATGAT CTCCTCTCTG
ATCATGTTGG CGCTGGCTAT CAGCGTATTA TTGAGCGTGT TATACGTGAT CTATAAACCC
ATATTACTGC TCAAGGAGAT GGTTACAGAG CTGTCTAAGG GTAATGGTGA TCTTACTCGT
CGACTGGAGG TCAAGAACCT CGATGATTTG GGAGAGATAT CTCAGGGGAT CAACCAATTC
ATCGCCAATT TACAATCTAT GATGTTGGAA GTTTTGCAAT CATCGACACA TATCGGTAGC
AGCGTGGAGC GCCTTAAGTC AGAAACCGAA GCCAACAGCC ATATCCTTGC CGCGCACACC
ACGGAGACCG AGCAGATCGT CGCCGCCATC GAAGAGATGA GTGCAACCGC CAACGATGTT
GCCAGAAATG GTGCGGAAAC CGCCTCTTTC ACTCAAGTCA CCAATAGCCA AACGCTGGAA
TCTAAGGCCG TGGTAGGTCA AGCCACCGAC ACTGTCGCAC AACTGGTCAG GGAAGTTGAA
AACACCTCCG CCAATATTGC CGAGATAGAC AGAGATACGG TCAACATTAC TCAAGTATTG
AAAGTGATAG GTGAAATAGC CGATCAGACC AACCTGCTGG CACTGAATGC CGCGATTGAA
GCCGCCAGAG CCGGAGAGCA AGGTCGGGGT TTTGCGGTGG TCGCCGATGA GGTGCGCGCT
CTGGCCGCCA GGACTCAGTC GAGCACGGCC GAAATCGAAC AGACTCTCAC AAAGCTGAGA
GAAGCCTCGA ATGCGGCTAT CACGGCGATG AATGTTACTA AGGCAACCTG TCTGAAAACG
GCCGAGACGA CGGAGCGAGT CGCATCGGAT CTCGATAACA TTGGCAGTTC GGTCAATCAG
ATCAATGACC TCAACACCCA AATCGCCACG GCCGCAGAGG AGCAAAGCTC GGTATCGGGC
GAGATCACCC GCAATATGTC GGCCATCCGA GAGATGGTAA ACGAGCTTTC CACCAATGGT
GAAGTCACCA GCAATGAAAC CGTAAATCTG GCCACCGCAA ACCATCAACT CAGGTTGATC
GTGGAACAGT TTAAGCTGTC TTAA
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| Protein sequence | MVSFHFCHCC GDKQLLGFRK SLIASMVTLV ALCLLISNWL SYIELKESTI ANTNEKLRSI
AKYESNNIEE WFTEKAKSID ALASHYQQGT YKGNYAQAAR LSTDVGGVAR IYFGFDDGSA
YSTETSSKWI DGKAIPEQYD PRTRPWYQQG KATTALDVTD IYVDDGTGHD VISILKNLGD
GVVLGDIELT FLADAVKAVD YPGAVVLITD QTGKVLASES KRLISGTHFS DFGLPEVERN
MLSQDEVMQE YTLDGVDKIA FSKAINLVNG KKWYLLIGLK KSVAYAAVDK ALSNAMISSL
IMLALAISVL LSVLYVIYKP ILLLKEMVTE LSKGNGDLTR RLEVKNLDDL GEISQGINQF
IANLQSMMLE VLQSSTHIGS SVERLKSETE ANSHILAAHT TETEQIVAAI EEMSATANDV
ARNGAETASF TQVTNSQTLE SKAVVGQATD TVAQLVREVE NTSANIAEID RDTVNITQVL
KVIGEIADQT NLLALNAAIE AARAGEQGRG FAVVADEVRA LAARTQSSTA EIEQTLTKLR
EASNAAITAM NVTKATCLKT AETTERVASD LDNIGSSVNQ INDLNTQIAT AAEEQSSVSG
EITRNMSAIR EMVNELSTNG EVTSNETVNL ATANHQLRLI VEQFKLS
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