215 homologs were found in PanDaTox collection
for query gene Lferr_0967 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  100 
 
 
426 aa  875    Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  98.47 
 
 
409 aa  797    Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  61.37 
 
 
456 aa  480  1e-134  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  42.96 
 
 
426 aa  233  4.0000000000000004e-60  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  43.75 
 
 
403 aa  214  2.9999999999999995e-54  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_010831  Cphamn1_0334  restriction modification system DNA specificity domain  41.13 
 
 
430 aa  172  1e-41  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.284396 
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  33.44 
 
 
457 aa  166  8e-40  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  28.64 
 
 
428 aa  156  6e-37  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  27.32 
 
 
385 aa  135  9.999999999999999e-31  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  31.37 
 
 
429 aa  135  1.9999999999999998e-30  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1158  restriction modification system DNA specificity subunit  30.65 
 
 
454 aa  132  2.0000000000000002e-29  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000117149  normal 
 
 
-
 
NC_013161  Cyan8802_2277  restriction modification system DNA specificity domain protein  33.55 
 
 
433 aa  130  6e-29  Cyanothece sp. PCC 8802  Bacteria  normal  0.200455  hitchhiker  0.00000677276 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  25 
 
 
432 aa  128  2.0000000000000002e-28  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  34.43 
 
 
425 aa  127  4.0000000000000003e-28  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  26.01 
 
 
422 aa  126  8.000000000000001e-28  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  30.84 
 
 
435 aa  124  3e-27  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  25.48 
 
 
424 aa  124  3e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  30.83 
 
 
387 aa  119  1.9999999999999998e-25  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1897  restriction modification system DNA specificity subunit  33.45 
 
 
433 aa  119  1.9999999999999998e-25  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1671  restriction modification system DNA specificity subunit  29.89 
 
 
442 aa  115  2.0000000000000002e-24  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.517259  hitchhiker  0.00037426 
 
 
-
 
NC_011831  Cagg_1805  restriction modification system DNA specificity domain protein  29.94 
 
 
423 aa  114  3e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.745604  normal  0.535567 
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  37.99 
 
 
393 aa  113  6e-24  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3953  restriction modification system DNA specificity domain protein  23.7 
 
 
413 aa  112  2.0000000000000002e-23  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  33.5 
 
 
415 aa  110  3e-23  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_011898  Ccel_2724  restriction modification system DNA specificity domain protein  25.85 
 
 
409 aa  108  1e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  32.99 
 
 
417 aa  103  8e-21  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  37.63 
 
 
414 aa  101  2e-20  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1091  restriction modification system DNA specificity domain protein  28.15 
 
 
444 aa  101  3e-20  Rhodothermus marinus DSM 4252  Bacteria  normal  0.17387  n/a   
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  25.36 
 
 
409 aa  100  4e-20  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  29.11 
 
 
408 aa  99  1e-19  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  29.63 
 
 
402 aa  98.2  2e-19  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_008261  CPF_2598  type I restriction-modification enzyme, S subunit  26.91 
 
 
417 aa  97.4  4e-19  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0133376  n/a   
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  27.86 
 
 
419 aa  96.7  7e-19  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_007484  Noc_2904  restriction modification system DNA specificity subunit  27.27 
 
 
425 aa  96.3  1e-18  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  25.85 
 
 
425 aa  95.1  2e-18  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  26.11 
 
 
528 aa  95.1  2e-18  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2689  restriction modification system DNA specificity subunit  30.88 
 
 
290 aa  95.5  2e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.841682  normal 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  29.35 
 
 
406 aa  94  4e-18  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  26.73 
 
 
374 aa  91.3  3e-17  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  26.69 
 
 
364 aa  90.1  6e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_008786  Veis_2423  restriction modification system DNA specificity subunit  25.32 
 
 
426 aa  89.7  8e-17  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.57431  normal 
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  31.75 
 
 
393 aa  89.4  1e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  27.76 
 
 
429 aa  88.6  2e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  25.31 
 
 
456 aa  87  5e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  25.44 
 
 
422 aa  87  6e-16  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_008751  Dvul_0487  restriction modification system DNA specificity subunit  26.67 
 
 
438 aa  86.3  9e-16  Desulfovibrio vulgaris DP4  Bacteria  normal  0.700794  normal  0.0187002 
 
 
-
 
NC_011149  SeAg_B4821  type I restriction-modification system, endonuclease S subunit  25.23 
 
 
382 aa  85.9  0.000000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  31.61 
 
 
417 aa  84.3  0.000000000000004  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_008639  Cpha266_0895  N-6 DNA methylase  25.33 
 
 
834 aa  82.4  0.00000000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  27.36 
 
 
423 aa  82  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_008599  CFF8240_1393  restriction and modification enzyme CjeI  31.91 
 
 
1285 aa  81.6  0.00000000000002  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  25.26 
 
 
413 aa  82  0.00000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  31.4 
 
 
477 aa  81.3  0.00000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_2698  restriction modification system DNA specificity subunit  33.33 
 
 
267 aa  80.9  0.00000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0854775  n/a   
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  26.3 
 
 
439 aa  80.5  0.00000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013203  Apar_0198  restriction modification system DNA specificity domain protein  26.09 
 
 
386 aa  80.1  0.00000000000006  Atopobium parvulum DSM 20469  Bacteria  normal  0.719886  decreased coverage  0.000218103 
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  24.36 
 
 
388 aa  80.1  0.00000000000007  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  28.1 
 
 
511 aa  80.1  0.00000000000007  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  24.51 
 
 
438 aa  79.3  0.0000000000001  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_011761  AFE_1576  type I restriction-modification system, S subunit  27.73 
 
 
399 aa  79  0.0000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.200835  n/a   
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  21.75 
 
 
405 aa  79.3  0.0000000000001  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  22.83 
 
 
416 aa  79.7  0.0000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_009707  JJD26997_1911  hypothetical protein  25.36 
 
 
453 aa  78.6  0.0000000000002  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  0.568524  n/a   
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  26.86 
 
 
399 aa  78.6  0.0000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  24.71 
 
 
476 aa  77.8  0.0000000000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  31.53 
 
 
616 aa  76.6  0.0000000000008  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1496  restriction modification system DNA specificity domain protein  26.15 
 
 
427 aa  76.6  0.0000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.136919  normal 
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  24.34 
 
 
427 aa  76.3  0.0000000000009  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_002977  MCA1890  type I restriction-modification system, S subunit  22.31 
 
 
416 aa  75.9  0.000000000001  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2926  restriction modification system DNA specificity subunit  28.57 
 
 
434 aa  75.9  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  30.11 
 
 
420 aa  76.3  0.000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  24.84 
 
 
447 aa  75.5  0.000000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
NC_009513  Lreu_0871  restriction modification system DNA specificity subunit  27.68 
 
 
211 aa  75.5  0.000000000002  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  25.73 
 
 
413 aa  74.7  0.000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0076  type I restriction-modification system subunit S  25.18 
 
 
464 aa  73.9  0.000000000005  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  28.12 
 
 
194 aa  73.9  0.000000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013165  Shel_17660  restriction endonuclease S subunit  24.11 
 
 
416 aa  73.6  0.000000000007  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  24.22 
 
 
620 aa  72.4  0.00000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  26.67 
 
 
435 aa  72.8  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  26.46 
 
 
432 aa  72.8  0.00000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  26.96 
 
 
565 aa  71.6  0.00000000002  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_009379  Pnuc_1132  restriction modification system DNA specificity subunit  28.64 
 
 
556 aa  72  0.00000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.817215  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  21.88 
 
 
420 aa  72  0.00000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  24.21 
 
 
440 aa  71.2  0.00000000003  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3940  restriction modification system DNA specificity domain protein  24.03 
 
 
453 aa  70.1  0.00000000006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009135  MmarC5_0615  restriction modification system DNA specificity subunit  25.54 
 
 
417 aa  69.7  0.00000000008  Methanococcus maripaludis C5  Archaea  normal  0.0545068  n/a   
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  22.47 
 
 
442 aa  69.7  0.00000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_2364  restriction modification system DNA specificity subunit  25 
 
 
413 aa  68.6  0.0000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.188022 
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  22.38 
 
 
439 aa  66.6  0.0000000007  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_007969  Pcryo_1360  restriction modification system DNA specificity subunit  22.69 
 
 
453 aa  66.6  0.0000000008  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.502069 
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  27.84 
 
 
400 aa  66.6  0.0000000008  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  24.59 
 
 
549 aa  66.6  0.0000000009  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_004578  PSPTO_0006  type I restriction-modification system, S subunit, EcoA family  22.77 
 
 
435 aa  65.9  0.000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  26.8 
 
 
417 aa  65.1  0.000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  26.49 
 
 
285 aa  65.1  0.000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  24.27 
 
 
437 aa  65.5  0.000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  21.18 
 
 
419 aa  64.7  0.000000003  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  26.67 
 
 
471 aa  64.7  0.000000003  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0988  type I restriction-modification system, S subunit  27.59 
 
 
401 aa  64.7  0.000000003  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271922  n/a   
 
 
-
 
NC_010085  Nmar_0605  restriction modification system DNA specificity subunit  28.25 
 
 
453 aa  64.7  0.000000003  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
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