| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2792 |
|---|
| Symbol | |
|---|
| ID | 8545180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 3832106 |
|---|
| End bp | 3833377 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 646387484 |
|---|
| Product | restriction modification system DNA specificity domain protein |
|---|
| Protein accession | YP_003267212 |
|---|
| Protein GI | 262196003 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0732] Restriction endonuclease S subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.313089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGATG AGCTGCAAGT GCCAACGCGA TGGAGACGTG TTCGCTTGCT GGATCATGTA
GATCTTCCCA GCGGTCAGGT CGATCCACGT GACCCTCAAT ACCGCTCGCA ACCCTTGGTT
GCCCCAAACC ACATAGAATC GCAGACTGGA CGGCTCCTTG CACTCGAAAG TGCTGAGTCG
CAAAATGCTA TCAGCGGTAA ATACACGTTT TCTGCTGGGG ACGTTGTTTA CAGTAAAATT
CGTCCCTATT TGCGGAAAGC GATCCTCGCG TCGTTTGACG GGCTGTGCAG CGCAGATATG
TATCCGTTGC GCGCGAAAAC TTCCGTCGAG CCCGGGTTTC TTCTTGCTCT TCTCCTAGGC
GAAGAATTCT CCTCATTCGC AGAGTCTGTA TCGATGCGGA CCGGTATTCC GAAGCTCAAC
CGGAAAGAGT TGGGTTCGTA TCACGCTCGG CTGCCGCCGT TGGGGGAGCA GCGGAAGATT
GCGGCGATCT TGGGGGCGGT GGATGAGGCC ATCGCCAGGA CCCAGGCGGT CATCGAGCAG
GTGCAGGTGG TCAAGAAGGG CCTCATGCAA GATCTGCTCA CCCGCGGCCT CCCCGGCCGC
CACACCCGCT TCAAGCAAAC CGAAATCGGC CAAATCCCCG AATCGTGGTC AGCCGTCCGG
TTGGGCGACG TACTCGATGG CATCGATGCC GGCTGGAGTC CTAAGTGCGC CAATCATCCT
GCAGGCAATG GTGAATGGGG TGTGCTCAAA GTGAGTAGCG TATCGTCGGG AATATACAAG
CCCGAAGAAA ACAAAATGTT ACCCGATGAT CTCATCCCCA AGCCCGAGTT GGAGGTGCGC
CCGGGTGATG TCATCATCGC ACGAGCTAGT GGAGTGCTAG ACTTGGTCGG CGTCTGCTCA
TTTGTATATA AAACGCGTCC TCGTCTAATG CTTTCCGACA AAACGCTACG GGTGCGGCCG
AACCGCACCC TGTTGGATAG CTTCTATCTT GCGCTGACTC TCCAAAGTCC CGTTGTGCGG
AGCTTAGTTT TAGAGAAAGC AACTGGTAGT CATATGCGCA ATATATCCCA AAAGGCCATC
GGTTCAGTCA CTGTGGCGCT TCCGTCATTG GATGAACAGG TCAAAGTATC GAGTGGTATT
ATGGCTATGG ACGCTCGGAT CGATAACGAT ACTCGAAGTG TAGAGTCTTT GACTGAACTG
AAATCCGCCC TCATGTCCGT CCTGCTCACC GGCGAAGTCC GGGTCACGCC GGACGAGGAG
AGTGCATCAT GA
|
|---|
| Protein sequence | MADELQVPTR WRRVRLLDHV DLPSGQVDPR DPQYRSQPLV APNHIESQTG RLLALESAES
QNAISGKYTF SAGDVVYSKI RPYLRKAILA SFDGLCSADM YPLRAKTSVE PGFLLALLLG
EEFSSFAESV SMRTGIPKLN RKELGSYHAR LPPLGEQRKI AAILGAVDEA IARTQAVIEQ
VQVVKKGLMQ DLLTRGLPGR HTRFKQTEIG QIPESWSAVR LGDVLDGIDA GWSPKCANHP
AGNGEWGVLK VSSVSSGIYK PEENKMLPDD LIPKPELEVR PGDVIIARAS GVLDLVGVCS
FVYKTRPRLM LSDKTLRVRP NRTLLDSFYL ALTLQSPVVR SLVLEKATGS HMRNISQKAI
GSVTVALPSL DEQVKVSSGI MAMDARIDND TRSVESLTEL KSALMSVLLT GEVRVTPDEE
SAS
|
|---|
| |