280 homologs were found in PanDaTox collection
for query gene GYMC61_1674 on replicon NC_013411
Organism: Geobacillus sp. Y412MC61



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  100 
 
 
477 aa  975    Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_0842  type I restriction-modification enzyme, S subunit, putative  35.23 
 
 
476 aa  268  2e-70  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  31.77 
 
 
520 aa  231  2e-59  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_011773  BCAH820_0845  restriction modification system DNA specificity domain protein  31.66 
 
 
495 aa  218  1e-55  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.31571e-19 
 
 
-
 
NC_010718  Nther_1991  restriction modification system DNA specificity domain  31.73 
 
 
490 aa  199  7e-50  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.120232  normal  0.112136 
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  33.56 
 
 
417 aa  197  4.0000000000000005e-49  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_007355  Mbar_A3272  type I restriction-modification system specificity subunit  46 
 
 
492 aa  184  4.0000000000000006e-45  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.425878  normal  0.243207 
 
 
-
 
NC_008740  Maqu_0030  restriction modification system DNA specificity subunit  43.6 
 
 
435 aa  171  2e-41  Marinobacter aquaeolei VT8  Bacteria  normal  0.534213  n/a   
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  30.33 
 
 
397 aa  167  2.9999999999999998e-40  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  29.58 
 
 
420 aa  160  6e-38  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  41.5 
 
 
422 aa  159  9e-38  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  38.59 
 
 
457 aa  159  9e-38  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009483  Gura_2097  restriction modification system DNA specificity subunit  27.97 
 
 
393 aa  152  1e-35  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2093  restriction modification system DNA specificity subunit  30.42 
 
 
477 aa  148  2.0000000000000003e-34  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_1170  restriction modification system DNA specificity subunit  29.31 
 
 
402 aa  148  2.0000000000000003e-34  Methanococcus maripaludis C5  Archaea  normal  0.249165  n/a   
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  28.44 
 
 
422 aa  148  2.0000000000000003e-34  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  40.43 
 
 
418 aa  140  3.9999999999999997e-32  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1643  restriction modification system DNA specificity domain protein  39.69 
 
 
428 aa  140  4.999999999999999e-32  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_1204  restriction modification system DNA specificity subunit  25.7 
 
 
547 aa  139  1e-31  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.340549  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  40 
 
 
456 aa  137  5e-31  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_009801  EcE24377A_0287  type I restriction modification DNA specificity domain-containing protein  40.88 
 
 
471 aa  135  1.9999999999999998e-30  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1492  restriction modification system DNA specificity subunit  26.85 
 
 
479 aa  135  1.9999999999999998e-30  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1398  restriction modification system DNA specificity subunit  23.72 
 
 
557 aa  132  1.0000000000000001e-29  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20210  restriction modification system DNA specificity domain protein  25.36 
 
 
565 aa  130  4.0000000000000003e-29  Halothermothrix orenii H 168  Bacteria  normal  0.266778  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  36.08 
 
 
400 aa  130  4.0000000000000003e-29  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  26.15 
 
 
406 aa  127  5e-28  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_010814  Glov_1414  restriction modification system DNA specificity domain  28.29 
 
 
447 aa  123  6e-27  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.00014984  n/a   
 
 
-
 
NC_009720  Xaut_1095  restriction modification system DNA specificity subunit  24.84 
 
 
450 aa  122  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  35.64 
 
 
435 aa  122  1.9999999999999998e-26  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_007955  Mbur_0508  restriction modification system DNA specificity subunit  25.58 
 
 
511 aa  122  1.9999999999999998e-26  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  24.94 
 
 
462 aa  121  3e-26  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_007355  Mbar_A2665  type I restriction-modification system specificity subunit  27.39 
 
 
446 aa  120  3.9999999999999996e-26  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0650221  normal  0.332066 
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  34.01 
 
 
460 aa  120  3.9999999999999996e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  38.89 
 
 
424 aa  120  3.9999999999999996e-26  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  35.68 
 
 
616 aa  117  3.9999999999999997e-25  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  32.29 
 
 
557 aa  117  6e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_008709  Ping_1897  restriction modification system DNA specificity subunit  25.05 
 
 
611 aa  117  6e-25  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00184495 
 
 
-
 
CP001637  EcDH1_3649  restriction modification system DNA specificity domain protein  24.38 
 
 
464 aa  115  2.0000000000000002e-24  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1061  putative type I restriction-modification system, S subunit  24.04 
 
 
528 aa  115  2.0000000000000002e-24  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02063  type I restriction-modification system, S subunit  23.83 
 
 
501 aa  115  2.0000000000000002e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0854  restriction modification system DNA specificity subunit  25.57 
 
 
595 aa  114  5e-24  Desulfovibrio vulgaris DP4  Bacteria  normal  0.221182  normal  0.0643125 
 
 
-
 
NC_002967  TDE2744  type I restriction-modification system, S subunit  24.57 
 
 
532 aa  110  4.0000000000000004e-23  Treponema denticola ATCC 35405  Bacteria  normal  0.0181132  n/a   
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  33.33 
 
 
438 aa  110  4.0000000000000004e-23  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_007204  Psyc_0416  type I restriction-modification system S subunit  26.14 
 
 
457 aa  110  5e-23  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.0531711 
 
 
-
 
NC_009379  Pnuc_1132  restriction modification system DNA specificity subunit  22.51 
 
 
556 aa  110  7.000000000000001e-23  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.817215  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  39.6 
 
 
420 aa  109  1e-22  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3180  restriction modification system DNA specificity domain protein  27.03 
 
 
390 aa  108  2e-22  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2960  restriction modification system DNA specificity subunit  24.84 
 
 
587 aa  108  3e-22  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  31 
 
 
437 aa  106  1e-21  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_2862  restriction modification system DNA specificity subunit  24.8 
 
 
589 aa  105  2e-21  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0268  restriction endonuclease S subunits  26.23 
 
 
444 aa  103  5e-21  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.277222  normal 
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  24.78 
 
 
417 aa  103  6e-21  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  39.86 
 
 
406 aa  103  8e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4264  type I restriction-modification system, S subunit  24.62 
 
 
495 aa  101  3e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008043  TM1040_3540  restriction modification system DNA specificity subunit  22.09 
 
 
387 aa  101  3e-20  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_003912  CJE1195  type II restriction-modification enzyme  34.41 
 
 
1343 aa  99.4  1e-19  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  31.22 
 
 
285 aa  97.1  6e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_012669  Bcav_0504  restriction modification system DNA specificity domain protein  32.07 
 
 
408 aa  96.3  1e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1015  restriction modification system DNA specificity subunit  21.06 
 
 
575 aa  95.9  1e-18  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  30.23 
 
 
442 aa  95.9  2e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1064  type I restriction-modification  29.22 
 
 
453 aa  94.7  3e-18  Synechococcus elongatus PCC 7942  Bacteria  hitchhiker  0.00000898872  normal  0.027841 
 
 
-
 
NC_011662  Tmz1t_3599  restriction modification system DNA specificity domain protein  27.32 
 
 
532 aa  94.4  4e-18  Thauera sp. MZ1T  Bacteria  normal  0.743632  n/a   
 
 
-
 
NC_009832  Spro_4083  restriction modification system DNA specificity subunit  30.15 
 
 
409 aa  94.4  4e-18  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_1635  restriction modification system DNA specificity domain protein  24.78 
 
 
419 aa  94  5e-18  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0235263  normal 
 
 
-
 
NC_009512  Pput_4611  restriction modification system DNA specificity subunit  23.08 
 
 
561 aa  92.8  1e-17  Pseudomonas putida F1  Bacteria  normal  0.483614  hitchhiker  0.0000795371 
 
 
-
 
NC_009656  PSPA7_0076  type I restriction-modification system subunit S  25 
 
 
464 aa  92.4  1e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3719  restriction modification system DNA specificity subunit  22.08 
 
 
585 aa  92.4  2e-17  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  29.05 
 
 
429 aa  90.9  4e-17  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1502  restriction modification system DNA specificity domain  22.2 
 
 
393 aa  91.3  4e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  29.06 
 
 
413 aa  90.9  5e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_010498  EcSMS35_4761  type I restriction modification DNA specificity domain-containing protein  24.94 
 
 
428 aa  90.5  6e-17  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009637  MmarC7_0016  restriction modification system DNA specificity subunit  30.26 
 
 
432 aa  90.5  7e-17  Methanococcus maripaludis C7  Archaea  normal  0.0597513  hitchhiker  0.0012471 
 
 
-
 
NC_011353  ECH74115_5859  putative type I restriction-modification system, S subunit  22.65 
 
 
584 aa  90.1  9e-17  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0347  type I restriction-modification system, S subunit  26.1 
 
 
390 aa  89.7  9e-17  Campylobacter lari RM2100  Bacteria  hitchhiker  0.00000269296  n/a   
 
 
-
 
NC_011206  Lferr_0227  restriction modification system DNA specificity domain  23.95 
 
 
395 aa  89.7  1e-16  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1858  restriction modification system DNA specificity subunit  28.5 
 
 
456 aa  88.6  2e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3515  restriction modification system DNA specificity domain  22.41 
 
 
514 aa  88.6  2e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  29.21 
 
 
427 aa  88.6  2e-16  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_013161  Cyan8802_3989  restriction modification system DNA specificity domain protein  25.17 
 
 
456 aa  88.2  3e-16  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.0737122 
 
 
-
 
NC_013421  Pecwa_1672  restriction modification system DNA specificity domain protein  22.6 
 
 
493 aa  87.8  4e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4930  type I restriction enzyme StySJI specificity protein  27.61 
 
 
469 aa  87.8  4e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_1032  restriction modification system DNA specificity subunit  26.11 
 
 
457 aa  87.4  5e-16  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.41908  normal  0.322454 
 
 
-
 
NC_011832  Mpal_0900  restriction modification system DNA specificity domain protein  24.36 
 
 
471 aa  87  6e-16  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.963501 
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  24.17 
 
 
442 aa  86.7  8e-16  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_009483  Gura_4042  restriction modification system DNA specificity subunit  24.06 
 
 
428 aa  86.3  0.000000000000001  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0501  restriction modification system DNA specificity subunit  21.07 
 
 
612 aa  84  0.000000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.435558 
 
 
-
 
NC_010803  Clim_0128  N-6 DNA methylase  29.12 
 
 
846 aa  82.8  0.00000000000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_4189  restriction modification system DNA specificity domain protein  23.76 
 
 
401 aa  82.8  0.00000000000001  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008573  Shewana3_4241  restriction modification system DNA specificity subunit  29.89 
 
 
411 aa  82.8  0.00000000000001  Shewanella sp. ANA-3  Bacteria  normal  0.491612  hitchhiker  0.00127278 
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  28.09 
 
 
549 aa  83.2  0.00000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_013440  Hoch_5008  Restriction endonuclease S subunits-like protein  30.15 
 
 
465 aa  82.4  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.441656 
 
 
-
 
NC_009943  Dole_0822  restriction modification system DNA specificity subunit  20.96 
 
 
577 aa  82  0.00000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0193  type I restriction-modification system specificity determinant  28.06 
 
 
416 aa  81.6  0.00000000000003  Frankia sp. CcI3  Bacteria  normal  normal  0.311495 
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  30.45 
 
 
417 aa  81.3  0.00000000000004  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_008146  Mmcs_3777  restriction endonuclease S subunits-like protein  23.38 
 
 
419 aa  80.9  0.00000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3850  restriction endonuclease S subunits-like protein  23.38 
 
 
419 aa  80.9  0.00000000000004  Mycobacterium sp. KMS  Bacteria  normal  0.554786  normal 
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  31.4 
 
 
426 aa  81.3  0.00000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_007963  Csal_0086  restriction modification system DNA specificity protein  20.85 
 
 
538 aa  80.5  0.00000000000006  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3199  restriction modification system DNA specificity subunit  24.89 
 
 
400 aa  80.5  0.00000000000007  Marinomonas sp. MWYL1  Bacteria  normal  0.365834  normal 
 
 
-
 
NC_007514  Cag_1122  restriction endonuclease S subunits-like  34.62 
 
 
428 aa  80.1  0.00000000000007  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.878738  n/a   
 
 
-
 
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