Gene Sfri_1954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1954 
Symbol 
ID4278866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2319199 
End bp2320419 
Gene Length1221 bp 
Protein Length406 aa 
Translation table11 
GC content42% 
IMG OID638134741 
Productrestriction modification system DNA specificity subunit 
Protein accessionYP_750638 
Protein GI114563125 
COG category[V] Defense mechanisms 
COG ID[COG0732] Restriction endonuclease S subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCAGT TGAACTATTT AGAGAAACTG CTGGATGGGG TAGATGTTGA GTGGAAACCA 
TTAGATGACA TTTCTGTAAA GATTTCTTCT GGTGGTACAC CAAAAACAGG TGTTGCCGAA
TTTTATGATG GTGATATTCC TTGGCTGCGT ACTCAAGAAG TTAATTTTGA TGAAATCTGG
GATACTGGCG TAAAAATTAC TGAAGCTGGA GTTGATAACT CAAGCGCAAA ATGGATTCCT
GCAAATTGCG TTATTGTAGC TATGTATGGA GCAACGGTTG GGAAAATTGG CATTAACAAA
ATTCCTATGA CCACAAATCA AGCATGCGCG AACATACAAC TAGATGGGAA TATAGCTAAT
TACCGATATG TGTTTCATTT TTTATTAAGC CAATATGAAT ATATAAAGTC ACTCGGGTCT
GGCTCGCAGA CCAATATTAA TGCGGGAATA GTAAAAAAAC TTGTAGTCCC CATCCCATGC
CCAAATAACC CAGAAAAATC GCTGGCAATA CAAGCTGAAA TAGTGCGTAT TCTGGACGCA
TTTACCGCCA TGACCGCCGA GCTGACCGCC GAGCTTATCA TGCGGAAAAA ACAATACAAC
TACTACCGCG ACCAGTTGCT AAGTTTTGAA GAGGGTGAAG TTGAGTGGAA GACGTTGGGC
GACCTTGCAG AAAATCTGGA CTCAAAGCGT AAGCCTATAA CCAGTGGTCT GAGAGAAGCT
GGCGAAATTC CATACTACGG TGCATCTGGT ATCGTCGATT ATGTCAAGGA TTACATATTT
GACGGTGATT ACTTATTAGT CTCTGAGGAT GGCGCAAATT TATTAGCCCG TAATACGCCT
ATAGCATTTA GTATTAGTGG TAAAACATGG GTAAACAATC ATGCTCACGT GCTTAAATTT
GAAACTTACG CGGAGAGGAA GTACGTTGAA TACTATCTGA ACAGTATCGA CCTAACTCCT
TACATTTCTG GAGCAGCCCA ACCAAAGTTG AATAAGAAGA ACTTGGAAAG TATAAATATT
CCAAATCCAG CGCCTAAAGA AAAAGAACGC ATTGTGGCTA TCTTAGATAA ATTTGATTCT
TTGACCTGTT CAATTAAAGA AGGTCTGCCC CGCGAAATAG AACTCCGCCA AAAGCAATAC
GAGTATTATC GTGACCTGTT GTTGAGCTTC CCTGCCAGTC CGGCAGGCGG GCCTCAATCT
CATTCAGATG AGGCGGCTTA A
 
Protein sequence
MSQLNYLEKL LDGVDVEWKP LDDISVKISS GGTPKTGVAE FYDGDIPWLR TQEVNFDEIW 
DTGVKITEAG VDNSSAKWIP ANCVIVAMYG ATVGKIGINK IPMTTNQACA NIQLDGNIAN
YRYVFHFLLS QYEYIKSLGS GSQTNINAGI VKKLVVPIPC PNNPEKSLAI QAEIVRILDA
FTAMTAELTA ELIMRKKQYN YYRDQLLSFE EGEVEWKTLG DLAENLDSKR KPITSGLREA
GEIPYYGASG IVDYVKDYIF DGDYLLVSED GANLLARNTP IAFSISGKTW VNNHAHVLKF
ETYAERKYVE YYLNSIDLTP YISGAAQPKL NKKNLESINI PNPAPKEKER IVAILDKFDS
LTCSIKEGLP REIELRQKQY EYYRDLLLSF PASPAGGPQS HSDEAA