189 homologs were found in PanDaTox collection
for query gene PC1_0864 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0864  restriction modification system DNA specificity domain protein  100 
 
 
413 aa  854    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0689213  n/a   
 
 
-
 
NC_011884  Cyan7425_3075  restriction modification system DNA specificity domain protein  40.64 
 
 
388 aa  286  7e-76  Cyanothece sp. PCC 7425  Bacteria  normal  0.40504  normal 
 
 
-
 
NC_007969  Pcryo_0951  restriction modification system DNA specificity subunit  35.29 
 
 
419 aa  234  2.0000000000000002e-60  Psychrobacter cryohalolentis K5  Bacteria  normal  unclonable  0.0000406123 
 
 
-
 
NC_013946  Mrub_2452  restriction modification system DNA specificity domain-containing protein  32.29 
 
 
419 aa  212  7.999999999999999e-54  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.587532 
 
 
-
 
NC_008761  Pnap_4778  restriction modification system DNA specificity subunit  32.28 
 
 
415 aa  201  1.9999999999999998e-50  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.16943  normal 
 
 
-
 
NC_010085  Nmar_0607  restriction modification system DNA specificity subunit  29.68 
 
 
438 aa  187  4e-46  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_002977  MCA0836  type I restriction-modification system S subunit  31.46 
 
 
416 aa  184  2.0000000000000003e-45  Methylococcus capsulatus str. Bath  Bacteria  normal  0.444813  n/a   
 
 
-
 
NC_013158  Huta_0102  restriction modification system DNA specificity domain protein  29 
 
 
442 aa  181  2.9999999999999997e-44  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_011761  AFE_2791  type I restriction-modification system, S subunit  40 
 
 
418 aa  163  5.0000000000000005e-39  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2415  restriction modification system DNA specificity domain  40 
 
 
418 aa  163  5.0000000000000005e-39  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.589349  normal  0.260014 
 
 
-
 
NC_009665  Shew185_2194  restriction modification system DNA specificity subunit  37.58 
 
 
427 aa  154  2.9999999999999998e-36  Shewanella baltica OS185  Bacteria  normal  0.122675  n/a   
 
 
-
 
NC_011059  Paes_0308  restriction modification system DNA specificity domain  32.76 
 
 
456 aa  153  5e-36  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.0548885  normal  0.428283 
 
 
-
 
NC_011071  Smal_1037  restriction modification system DNA specificity domain  31.17 
 
 
364 aa  142  9.999999999999999e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0890662  normal 
 
 
-
 
NC_009483  Gura_0549  restriction modification system DNA specificity subunit  39.32 
 
 
385 aa  139  7e-32  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009975  MmarC6_0041  restriction modification system DNA specificity subunit  33.18 
 
 
397 aa  138  2e-31  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1710  restriction modification system DNA specificity subunit  46.09 
 
 
414 aa  135  9.999999999999999e-31  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1094  restriction modification system DNA specificity domain protein  36.87 
 
 
205 aa  134  1.9999999999999998e-30  Methanosphaerula palustris E1-9c  Archaea  normal  0.0782363  normal  0.473834 
 
 
-
 
NC_009921  Franean1_3768  restriction modification system DNA specificity subunit  37.87 
 
 
374 aa  133  6e-30  Frankia sp. EAN1pec  Bacteria  normal  0.36553  normal 
 
 
-
 
NC_013161  Cyan8802_3132  restriction modification system DNA specificity domain protein  33.58 
 
 
424 aa  133  6.999999999999999e-30  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.474681 
 
 
-
 
NC_007955  Mbur_1218  restriction modification system DNA specificity subunit  39.51 
 
 
351 aa  131  2.0000000000000002e-29  Methanococcoides burtonii DSM 6242  Archaea  normal  0.67755  n/a   
 
 
-
 
NC_004578  PSPTO_1087  type I restriction-modification system, S subunit  24.46 
 
 
422 aa  130  3e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.247708  n/a   
 
 
-
 
NC_011726  PCC8801_2214  restriction modification system DNA specificity domain protein  29.56 
 
 
457 aa  125  1e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_2016  restriction modification system DNA specificity subunit  25.12 
 
 
417 aa  123  7e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0839323  normal 
 
 
-
 
NC_012918  GM21_0429  restriction modification system DNA specificity domain protein  28.17 
 
 
404 aa  121  1.9999999999999998e-26  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009943  Dole_0249  restriction modification system DNA specificity subunit  32.32 
 
 
393 aa  114  2.0000000000000002e-24  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0507  restriction modification system DNA specificity subunit  27.94 
 
 
429 aa  115  2.0000000000000002e-24  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2910  putative type I restriction-modification system, S subunit  37.09 
 
 
373 aa  114  3e-24  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3550  restriction modification system DNA specificity subunit  28.4 
 
 
417 aa  112  1.0000000000000001e-23  Ruegeria sp. TM1040  Bacteria  normal  0.257959  normal  0.256697 
 
 
-
 
NC_007413  Ava_3499  restriction modification system DNA specificity subunit  34.44 
 
 
405 aa  110  4.0000000000000004e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.082109 
 
 
-
 
NC_010682  Rpic_0448  restriction modification system DNA specificity domain  32.12 
 
 
435 aa  108  1e-22  Ralstonia pickettii 12J  Bacteria  normal  hitchhiker  0.00000159098 
 
 
-
 
NC_010730  SYO3AOP1_1357  restriction modification system DNA specificity domain  28.87 
 
 
425 aa  107  5e-22  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0971497  n/a   
 
 
-
 
NC_011901  Tgr7_1778  type I restriction-modification system specificity subunit  33.9 
 
 
419 aa  107  6e-22  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.926504  n/a   
 
 
-
 
NC_009953  Sare_2852  restriction endonuclease S subunits-like protein  29.37 
 
 
412 aa  103  4e-21  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0584008 
 
 
-
 
NC_009939  Dgeo_3109  restriction modification system DNA specificity subunit  26.3 
 
 
426 aa  103  8e-21  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_4622  Restriction endonuclease S subunits-like protein  26.75 
 
 
411 aa  102  1e-20  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.156513 
 
 
-
 
NC_013456  VEA_003235  type I restriction-modification system specificity subunit S  25.39 
 
 
437 aa  100  4e-20  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1566  restriction modification system DNA specificity subunit  26.05 
 
 
403 aa  100  4e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0293394  unclonable  0.0000192379 
 
 
-
 
NC_008740  Maqu_0414  restriction modification system DNA specificity subunit  24.82 
 
 
439 aa  99.4  9e-20  Marinobacter aquaeolei VT8  Bacteria  normal  0.405933  n/a   
 
 
-
 
NC_007947  Mfla_1176  restriction modification system DNA specificity subunit  23.16 
 
 
408 aa  98.2  2e-19  Methylobacillus flagellatus KT  Bacteria  normal  0.882603  normal 
 
 
-
 
NC_013440  Hoch_2792  restriction modification system DNA specificity domain protein  25.9 
 
 
423 aa  96.7  7e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  0.313089  normal 
 
 
-
 
NC_008261  CPF_2598  type I restriction-modification enzyme, S subunit  30.03 
 
 
417 aa  95.5  2e-18  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0133376  n/a   
 
 
-
 
NC_004347  SO_0382  type I restriction-modification system, S subunit  25.29 
 
 
439 aa  94.4  3e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_1674  restriction modification system DNA specificity domain protein  29.06 
 
 
477 aa  90.9  4e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_0403  restriction modification system DNA specificity subunit  28.49 
 
 
402 aa  90.5  5e-17  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_0777  type I restriction modification DNA specificity domain-containing protein  28.83 
 
 
422 aa  89.4  1e-16  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00318537  n/a   
 
 
-
 
NC_010581  Bind_2673  restriction modification system DNA specificity subunit  29.79 
 
 
415 aa  88.2  2e-16  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.574489 
 
 
-
 
NC_013421  Pecwa_1672  restriction modification system DNA specificity domain protein  29.83 
 
 
493 aa  88.2  2e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12768  type I restriction/modification system specificity determinant hsdS.1  47.13 
 
 
91 aa  88.6  2e-16  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_0750  restriction endonuclease S subunit  23.75 
 
 
387 aa  87.8  3e-16  Streptococcus thermophilus LMD-9  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_4348  restriction modification system DNA specificity subunit  29.82 
 
 
363 aa  87.8  3e-16  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0615  restriction modification system DNA specificity subunit  27.95 
 
 
417 aa  87  5e-16  Methanococcus maripaludis C5  Archaea  normal  0.0545068  n/a   
 
 
-
 
NC_007413  Ava_3267  restriction modification system DNA specificity subunit  24.05 
 
 
557 aa  85.5  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0920403  decreased coverage  0.00535253 
 
 
-
 
NC_009523  RoseRS_0735  restriction modification system DNA specificity subunit  22.98 
 
 
392 aa  85.1  0.000000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.142305 
 
 
-
 
NC_008312  Tery_4472  restriction modification system DNA specificity subunit  20.92 
 
 
415 aa  84.7  0.000000000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  0.270866  normal  0.0902542 
 
 
-
 
NC_011729  PCC7424_2086  restriction modification system DNA specificity domain protein  30.95 
 
 
417 aa  84  0.000000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000683293 
 
 
-
 
NC_007908  Rfer_1060  restriction modification system DNA specificity subunit  32.79 
 
 
397 aa  84  0.000000000000005  Rhodoferax ferrireducens T118  Bacteria  normal  0.588803  n/a   
 
 
-
 
NC_007925  RPC_3653  type I restriction enzyme StySPI specificity protein  27.78 
 
 
460 aa  83.6  0.000000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.234587  normal  0.701676 
 
 
-
 
NC_011726  PCC8801_2978  restriction modification system DNA specificity domain protein  31.61 
 
 
194 aa  83.2  0.000000000000007  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3793  restriction modification system DNA specificity subunit  28.33 
 
 
425 aa  83.2  0.000000000000008  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_04450  restriction modification system DNA specificity domain protein  27.96 
 
 
422 aa  82.4  0.00000000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0967  restriction modification system DNA specificity domain  25.26 
 
 
426 aa  82  0.00000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.800586  normal  0.821104 
 
 
-
 
NC_008599  CFF8240_0988  type I restriction-modification system, S subunit  27.27 
 
 
401 aa  82  0.00000000000002  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.271922  n/a   
 
 
-
 
NC_008786  Veis_3129  restriction modification system DNA specificity subunit  24.3 
 
 
416 aa  82  0.00000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.343622  normal  0.0250234 
 
 
-
 
NC_008346  Swol_2257  restriction endonuclease S subunits-like protein  25.15 
 
 
413 aa  80.9  0.00000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0808  specificity determinant HsdS-like  29.65 
 
 
363 aa  80.9  0.00000000000004  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.361917  n/a   
 
 
-
 
NC_011726  PCC8801_2988  restriction modification system DNA specificity domain protein  34.17 
 
 
386 aa  80.9  0.00000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009974  Haur_5276  restriction modification system DNA specificity subunit  30.26 
 
 
418 aa  80.9  0.00000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0132  restriction modification system DNA specificity subunit  27.08 
 
 
427 aa  80.1  0.00000000000007  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.47299 
 
 
-
 
NC_007298  Daro_1307  restriction modification system DNA specificity subunit  27.76 
 
 
285 aa  79.7  0.00000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.186237 
 
 
-
 
NC_013730  Slin_3089  restriction modification system DNA specificity domain protein  37.38 
 
 
520 aa  79.7  0.00000000000009  Spirosoma linguale DSM 74  Bacteria  normal  0.497517  normal  0.376247 
 
 
-
 
NC_002967  TDE2743  type I restriction-modification system, S subunit, truncation  28.95 
 
 
175 aa  79  0.0000000000001  Treponema denticola ATCC 35405  Bacteria  normal  0.441032  n/a   
 
 
-
 
NC_013411  GYMC61_0287  restriction modification system DNA specificity domain protein  23.4 
 
 
429 aa  79.3  0.0000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_2722  restriction modification system DNA specificity domain protein  25.5 
 
 
385 aa  78.2  0.0000000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011061  Paes_2397  restriction modification system DNA specificity domain  31.44 
 
 
417 aa  77.8  0.0000000000004  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000238697  n/a   
 
 
-
 
NC_009438  Sputcn32_0160  restriction modification system DNA specificity subunit  28.43 
 
 
399 aa  76.6  0.0000000000007  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3425  restriction endonuclease S subunits-like  23.08 
 
 
390 aa  76.6  0.0000000000008  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.835151  n/a   
 
 
-
 
NC_002967  TDE0368  type I restriction-modification system, S subunit, putative  35.15 
 
 
562 aa  76.3  0.0000000000009  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0387  restriction modification system DNA specificity domain  22.75 
 
 
435 aa  76.3  0.0000000000009  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0681662  n/a   
 
 
-
 
NC_008541  Arth_0987  restriction modification system DNA specificity subunit  26.06 
 
 
390 aa  75.9  0.000000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2391  restriction modification system DNA specificity subunit  25.25 
 
 
374 aa  75.5  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.164769  n/a   
 
 
-
 
NC_009438  Sputcn32_3525  restriction modification system DNA specificity subunit  28.93 
 
 
420 aa  75.1  0.000000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1954  restriction modification system DNA specificity subunit  30.63 
 
 
406 aa  73.2  0.000000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1071  restriction modification system DNA specificity subunit  27.38 
 
 
429 aa  72.4  0.00000000001  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4810  putative type I restriction-modification system specificity subunit  25.58 
 
 
360 aa  72  0.00000000002  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1220  restriction modification system DNA specificity domain protein  25 
 
 
620 aa  71.2  0.00000000003  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1027  restriction modification system DNA specificity subunit  33.33 
 
 
420 aa  70.9  0.00000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0829  type I restriction-modification system, S subunit  26.32 
 
 
409 aa  70.5  0.00000000005  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.232689  n/a   
 
 
-
 
NC_008786  Veis_3010  restriction modification system DNA specificity subunit  26.14 
 
 
549 aa  70.5  0.00000000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.340841  normal 
 
 
-
 
NC_011668  Sbal223_4454  restriction modification system DNA specificity domain protein  26.6 
 
 
406 aa  70.5  0.00000000006  Shewanella baltica OS223  Bacteria  normal  0.859615  normal 
 
 
-
 
NC_009438  Sputcn32_2909  restriction modification system DNA specificity subunit  21.94 
 
 
440 aa  70.1  0.00000000006  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1978  restriction modification system DNA specificity subunit  27.32 
 
 
616 aa  70.1  0.00000000006  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3549  restriction modification system DNA specificity subunit  25.42 
 
 
296 aa  69.7  0.00000000009  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.348533  normal 
 
 
-
 
NC_013093  Amir_0959  restriction modification system DNA specificity domain protein  25.9 
 
 
442 aa  68.6  0.0000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0149  restriction modification system DNA specificity subunit  21.94 
 
 
400 aa  68.6  0.0000000002  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008573  Shewana3_4163  restriction modification system DNA specificity subunit  23.94 
 
 
405 aa  67.8  0.0000000003  Shewanella sp. ANA-3  Bacteria  normal  0.864984  normal  0.0584456 
 
 
-
 
NC_009784  VIBHAR_05614  type I restriction-modification system S subunit  26.98 
 
 
432 aa  67.8  0.0000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010085  Nmar_0605  restriction modification system DNA specificity subunit  25.75 
 
 
453 aa  67.4  0.0000000004  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_009439  Pmen_0564  restriction modification system DNA specificity subunit  24.41 
 
 
415 aa  66.2  0.000000001  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00017151  decreased coverage  6.20122e-17 
 
 
-
 
NC_012912  Dd1591_4252  restriction modification system DNA specificity domain protein  28.64 
 
 
462 aa  65.9  0.000000001  Dickeya zeae Ech1591  Bacteria  normal  0.132013  n/a   
 
 
-
 
NC_007908  Rfer_0030  restriction modification system DNA specificity subunit  21.92 
 
 
447 aa  65.1  0.000000002  Rhodoferax ferrireducens T118  Bacteria  normal  0.539395  n/a   
 
 
-
 
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